View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_5 (Length: 689)
Name: NF1264_2D_low_5
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 13 - 673
Target Start/End: Original strand, 51114426 - 51115097
Alignment:
| Q |
13 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttcnnnnnnnagatatctgagaaaatattctgctaattattcatgtccatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51114426 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttctttttttagatatctgagaaaatattctgcaaattattcatgtccatt |
51114525 |
T |
|
| Q |
113 |
ggtgtttgaaccttatttatgtgttggattagaagttagatagaatgcatgcttgaaatgt----------agttcatttcacacggcaaataaggtaca |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
51114526 |
ggtgtttgaaccttatttatttgttggattagaagttagatagaatgcatgcttgaaatgtgtatgtctgtagttcatttcacacggcaaataagataca |
51114625 |
T |
|
| Q |
203 |
aaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctctggtttgatcctctt-agtgccaattttggtgtgttagtttga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51114626 |
aaacaaaatgaaacctacattaaaatgtgacatcggagtgtgttcttctcaagtctctagtttgatcctcttcagtgccaattttggtgtgttagtttga |
51114725 |
T |
|
| Q |
302 |
cttcttcttnnnnnnnntgtgaaactatcttaaaactaatcaacattcttctaattcctcgttgtgttgaaagttccatcgaaaattggcatctttctgc |
401 |
Q |
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| T |
51114726 |
cttcttcttaaaaaaaatgtgaaactatcttaaaactaatcaatattcttctaattcctcgtcgtgttgaaagttccatcgaaaattggcatctttctgc |
51114825 |
T |
|
| Q |
402 |
atacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttgaagctattgacaaactactcattcttttctgcattgattc |
501 |
Q |
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| T |
51114826 |
atacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttgaaactattgactgactactcattcttttctgcattgattc |
51114925 |
T |
|
| Q |
502 |
gagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaa |
601 |
Q |
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| T |
51114926 |
gagtgtttaattagttttaatatggtcaataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaa |
51115025 |
T |
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| Q |
602 |
atcctgagtttggaaattaggtggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaact |
673 |
Q |
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| T |
51115026 |
atcctgagtttggaaattaggtggttgttctctgtttcaatatttcaaatacaatggatggcttacaaaact |
51115097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 5768822 - 5768905
Alignment:
| Q |
371 |
aaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattg |
454 |
Q |
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|||||||||| |||| ||||||||||||||| || | || ||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
5768822 |
aaagttccatggaaatttggcatctttctgcttatggctacatattatgtttcttattttgaagttatcctttgtttgatattg |
5768905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 363 - 507
Target Start/End: Original strand, 1118657 - 1118800
Alignment:
| Q |
363 |
ttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttga |
462 |
Q |
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||||||||| | |||||| |||||| |||||||||||| | || |||||||||||||||||| | ||||||||||||||||| |||| |||||||| |
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| T |
1118657 |
ttgtgttgataattccatggaaaatatgcatctttctgctgagacccacatattatgtttcttattcttaaattatgctttgtctggtatt-gtttttga |
1118755 |
T |
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| Q |
463 |
agctattgacaaactactcattcttttctgcattgattcgagtgt |
507 |
Q |
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|| ||||||| | |||| ||||| ||||| |||||| |||||| |
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| T |
1118756 |
agatattgactacgtactgtttcttctctgctttgatttgagtgt |
1118800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 552616 - 552568
Alignment:
| Q |
13 |
gtttggtgttaatattattctagtacaaatttaattcttgattatctctttc |
64 |
Q |
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| T |
552616 |
gtttggtgttaatattattctg---caaatttaattcttgattgtctctttc |
552568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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