View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_54 (Length: 211)
Name: NF1264_2D_low_54
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 29981963 - 29982139
Alignment:
| Q |
11 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctttgcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981963 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctttgcg |
29982062 |
T |
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| Q |
111 |
ctgaatcgttttatgcatgtatggtgatcctctcctagctggtttatacactgccatcactattggtgtggtaatga |
187 |
Q |
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| T |
29982063 |
ctgaatcgttttatgcatgtatggtgatcctctcctagctggtttatacactgccatcactattggtgtggtaatga |
29982139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 8156063 - 8155967
Alignment:
| Q |
30 |
tattagattgattaaggtaggaatgttgtaggtgctg---------tggaaacaagctagtatcctaagctccgtgtctggatctttgcgctgaatc |
117 |
Q |
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| T |
8156063 |
tattagattgattaaggtaggaatgttgtaggtgctgaccgtgctatggaaacaagctagtatcctaagctcggtgtctggatctttgcgctgaatc |
8155967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 47370118 - 47370013
Alignment:
| Q |
11 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgtgtctggatctttgcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47370118 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatcctaagctccgcgtctggatctttgcg |
47370019 |
T |
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| Q |
111 |
ctgaat |
116 |
Q |
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|||||| |
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| T |
47370018 |
ctgaat |
47370013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 25523880 - 25523953
Alignment:
| Q |
11 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523880 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
25523953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 36613657 - 36613730
Alignment:
| Q |
11 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36613657 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgttgtggaaacaagctagtatc |
36613730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 7674788 - 7674715
Alignment:
| Q |
11 |
gtgttcctcttgatgattctattagattgattaaggtaggaatgttgtaggtgctgtggaaacaagctagtatc |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
7674788 |
gtgttcctcttgatgattctattagattgattaaggtaggagtgttgtaggtgctgttgaaacaagctagtatc |
7674715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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