View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_2D_low_59 (Length: 204)
Name: NF1264_2D_low_59
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_59 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 46549971 - 46549784
Alignment:
| Q |
17 |
acatcacacggcaaataacttgccatagacttcagaaaatgtctggtggtgaagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46549971 |
acatcacacggcaaataacttgccctagacttcagaaaatgtctggtggtgaagtaacgaaaacaaaggttcaaccaaatttttgctggctaatacttaa |
46549872 |
T |
|
| Q |
117 |
aacgcaaagttgcatataatatgcattaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46549871 |
aacgcaaagttgcatataatatgcattaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattg |
46549784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 1026502 - 1026340
Alignment:
| Q |
41 |
atagacttcagaaaatgtctggtggtgaagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaaacgcaaagttgcatataatatgc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1026502 |
atagacttcagaaaatgtctggtggtgaagtaacgaaaacaaaggttcaaccaaatttgtgttgtctaatacttaatacgcaaagttgcatataatatgc |
1026403 |
T |
|
| Q |
141 |
attaaattaaattcataccagtgataaattgtagacgacaaaatgaacataaataaatagattg |
204 |
Q |
| |
|
| | | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1026402 |
a-tcatttaaattcataccagtgataaattgtagacgacaaaataaacatacataaatagattg |
1026340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 40828249 - 40828185
Alignment:
| Q |
32 |
taacttgccatagacttcagaaaatgtctg--gtggtgaagcaacgaaaacaaaggttcaaccaa |
94 |
Q |
| |
|
||||||||||| ||||| | |||||||||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
40828249 |
taacttgccatcgactttacaaaatgtctgtggtggtgaagtaatgaaaacaaaggttcaaccaa |
40828185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University