View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_2D_low_7 (Length: 655)

Name: NF1264_2D_low_7
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_2D_low_7
NF1264_2D_low_7
[»] chr8 (16 HSPs)
chr8 (1-643)||(6391532-6392183)
chr8 (1-643)||(6410694-6411347)
chr8 (466-643)||(6353510-6353687)
chr8 (554-643)||(6364471-6364560)
chr8 (463-643)||(7460579-7460759)
chr8 (463-643)||(6425197-6425377)
chr8 (558-643)||(6290510-6290595)
chr8 (505-643)||(6371253-6371391)
chr8 (13-89)||(6370634-6370711)
chr8 (463-643)||(6275663-6275843)
chr8 (554-637)||(6264929-6265012)
chr8 (462-643)||(6333090-6333271)
chr8 (554-648)||(6322615-6322709)
chr8 (22-76)||(6352939-6352993)
chr8 (555-648)||(6458262-6458355)
chr8 (560-627)||(6452174-6452241)
[»] chr3 (2 HSPs)
chr3 (555-641)||(36743935-36744021)
chr3 (560-628)||(35722304-35722372)
[»] chr2 (1 HSPs)
chr2 (558-648)||(42694394-42694484)
[»] chr5 (1 HSPs)
chr5 (560-627)||(9603101-9603168)


Alignment Details
Target: chr8 (Bit Score: 564; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 6391532 - 6392183
Alignment:
1 ccatgcagtgcgatcctctactcatagtaagaaattttcaaaagattcatgagctttctttatatgattgtgtatataattaaatatattgttaggacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6391532 ccatgcagtgcgatcctctactcatagtaagaaattttcaaaagattcatgagctttctttatatgattgtgtatataattaaatatattgttaggacta 6391631  T
101 ggaatttccgactaatatataccttgaatcactagtggtgttg---------gacgttcaccagcgaaaagcgagagaacatcatcaaaggagttaaact 191  Q
    |||||||||||||||||| ||||||||||||||||||||||||         || |||||||||||||||||||||| || |||||||||||||||||||    
6391632 ggaatttccgactaatatttaccttgaatcactagtggtgttgaaaactttggatgttcaccagcgaaaagcgagagcacgtcatcaaaggagttaaact 6391731  T
192 ctgcttgatcgttttgtaatctaaccagcgctcttaattcaggtgtctcatattgagatattgatttgatggtgttaacaacaaagtctgacgatttctg 291  Q
    || ||||||| ||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
6391732 ctacttgatcattttgtaatcttactagcgatcttaattgaggtgtctcatattgagatattgatttgatggtgttaacaacaaagtctgacgatttcgg 6391831  T
292 agggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaaaatatgttttctcgaaata 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
6391832 agggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaaaatatgttttgtcgaaata 6391931  T
392 agtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtttggagtctcacatttctcgaggtgttttctgccagttcttccccttcgaggg 491  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6391932 agtaaaaatatatatcacaacaaaaaattgcaaacagacacaagtgtttggagtctcacatttctcgaggtgttttctgccagttcttccccttcgaggg 6392031  T
492 taaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattctgt 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6392032 taaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattctgt 6392131  T
592 cccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
6392132 cccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 6392183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Original strand, 6410694 - 6411347
Alignment:
1 ccatgcagtgcgatcctctactcatagtaagaaattttcaaaagattcatgagctttctttatatgattgtgtatataattaaatatattgttaggacta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
6410694 ccatgcagtgcgatcctctactcatagtaagaaattttcaaaagatccatgagctttttttatatgattgtgtatataattaaatatattgttaggacta 6410793  T
101 ggaatttccgactaa--tatataccttgaatcactagtggtgttggac---------gttcaccagcgaaaagcgagagaacatcatcaaaggagttaaa 189  Q
    |||||||| ||||||  ||||||||| ||||||||||||||||||||          |||| ||||||||||||||||| || |||||||||||||||||    
6410794 ggaatttctgactaagatatatacctcgaatcactagtggtgttggaaagtctggatgttcgccagcgaaaagcgagagcacttcatcaaaggagttaaa 6410893  T
190 ctctgcttgatcgttttgtaatctaaccagcgctcttaattcaggtgtctcatattgagatattgatttgatggtgttaacaacaaagtctgacgatttc 289  Q
    ||||| ||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
6410894 ctctggttgatcgttttgtaatctaactagcgatcttaattgaggtgtctcatgttgagatattaatttgagggtgttaacaacaaagtctgacgatttc 6410993  T
290 tgagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaaaatatgttttctcgaaa 389  Q
    |||||||| |||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
6410994 tgagggatgattaattcatctcttggaatgtaaaaatatccactccgactctcggtctctggatctgttcattatagtaacaaaatatgttttgtcgaaa 6411093  T
390 taagtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtttggagtctcacatttctcgaggtgttttctgccagttcttccccttcgag 489  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
6411094 taagtaaaaatatatatcacaacaaaatattgtaaacatacacaagtgtttggagtctcacatttctcaagacgttttctgccagttcttccccttcgag 6411193  T
490 ggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattct 589  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
6411194 ggtaaggcaaggcggctgatcccccaagaactggacgatacaagcaaggactttcgtctggttgacccaaatcattgtagacatcataatcatatattct 6411293  T
590 gtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
6411294 gtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttc 6411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 466 - 643
Target Start/End: Original strand, 6353510 - 6353687
Alignment:
466 ttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcatt 565  Q
    ||||||||||||||||||||||||||||||| ||  |  ||||||||||||||| | ||||   |||   ||| ||   ||| || | ||||||||||||    
6353510 ttctgccagttcttccccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcatt 6353609  T
566 gtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
6353610 gtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttc 6353687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 554 - 643
Target Start/End: Original strand, 6364471 - 6364560
Alignment:
554 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
6364471 acccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttc 6364560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 463 - 643
Target Start/End: Original strand, 7460579 - 7460759
Alignment:
463 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 562  Q
    |||||||||| |||||||||||||||||||||||||||      | ||| |||  ||| ||||||  ||||| ||  || ||||| || | |||||| ||    
7460579 gttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggtcgggatcacccaagtc 7460678  T
563 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
7460679 attgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttc 7460759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 463 - 643
Target Start/End: Original strand, 6425197 - 6425377
Alignment:
463 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 562  Q
    |||||||||| ||||| ||||||||||||||||||||||   | ||||| |||||||||||||||  ||||  ||| ||   ||| || | |||||||||    
6425197 gttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagtcaggctcacccaaatc 6425296  T
563 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    |||||||||||| |||||||| || || ||||||||||| ||||||||  ||||||||||||||||||| ||||| |||||    
6425297 attgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttc 6425377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 558 - 643
Target Start/End: Original strand, 6290510 - 6290595
Alignment:
558 aaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
6290510 aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttc 6290595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 505 - 643
Target Start/End: Original strand, 6371253 - 6371391
Alignment:
505 ttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattctgtcccattccttacg 604  Q
    |||||||||||||||||||||||  ||||| ||  | || |||||||| ||||||||||||||||||||| || ||||| || || |||||||| || ||    
6371253 ttgatcccccaagaactggacgacccaagccagcctctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcg 6371352  T
605 ctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||| || |||||||||||||||||||| ||||| |||||    
6371353 ctcacccgttccatctcctcttaaagtcttcaactcttc 6371391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 6370634 - 6370711
Alignment:
13 atcctctactcatagtaagaaattttcaaaagattc-atgagctttctttatatgattgtgtatataattaaatatat 89  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||    
6370634 atcctctactcatagtaacaaattttcaaaagaatccatgagctttctttatatgattttgtatatagttaaatatat 6370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 643
Target Start/End: Original strand, 6275663 - 6275843
Alignment:
463 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 562  Q
    |||| ||||| ||||| || |||||||||||||||||||   | ||||| |||| ||| ||||||  |||||  |  || | ||| || | ||||| |||    
6275663 gtttcctgccggttctccctcttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccacatc 6275762  T
563 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    |||||||||||| || ||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||    
6275763 attgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttc 6275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 554 - 637
Target Start/End: Original strand, 6264929 - 6265012
Alignment:
554 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaa 637  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| || ||||| || |||||||||||||||||||| |||||    
6264929 acccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaa 6265012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 643
Target Start/End: Original strand, 6333090 - 6333271
Alignment:
462 tgttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaat 561  Q
    ||||| ||||| ||||| |||||||||||||||||||||  | | ||||| |||| ||| ||||||  |||||     || | ||| || | |||||| |    
6333090 tgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtcaggatcacccaagt 6333189  T
562 cattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttc 643  Q
    ||||||| ||||| || ||||| || || ||| |||| || ||||| || |||||||||||||||||||| |||||||||||    
6333190 cattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttc 6333271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 648
Target Start/End: Original strand, 6322615 - 6322709
Alignment:
554 acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcatctc 648  Q
    |||||| |||||||| ||||| || ||||| ||||| ||   |||||| ||||  || |||||||||||||||||||| ||||||||||| ||||    
6322615 acccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttctc 6322709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 6352939 - 6352993
Alignment:
22 tcatagtaagaaattttcaaaagattcatgagctttctttatatgattgtgtata 76  Q
    ||||| ||||||||||||||||||| ||| || ||||||||||||||| ||||||    
6352939 tcatattaagaaattttcaaaagatccattagatttctttatatgattttgtata 6352993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 555 - 648
Target Start/End: Original strand, 6458262 - 6458355
Alignment:
555 cccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcatctc 648  Q
    ||||||||||| || | |||||||||||| | ||| |||  ||| || ||||||||||||||||||||||||| ||| | ||| ||||| ||||    
6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctc 6458355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 627
Target Start/End: Original strand, 6452174 - 6452241
Alignment:
560 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctctta 627  Q
    |||||| || ||||||||||| ||||| || |||||||| || || ||||| ||||||||||||||||    
6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctctta 6452241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 641
Target Start/End: Complemental strand, 36744021 - 36743935
Alignment:
555 cccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattct 641  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||||| | | ||||||||||| |||||||||| |||||||    
36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagtatccaattct 36743935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 628
Target Start/End: Complemental strand, 35722372 - 35722304
Alignment:
560 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaa 628  Q
    |||||||||||||||||||||||| ||||||||  ||| ||||||||||||   ||||| |||||||||    
35722372 atcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa 35722304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 648
Target Start/End: Original strand, 42694394 - 42694484
Alignment:
558 aaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcatctc 648  Q
    |||||||||||||||||||||||||| ||||| |||||||| || || ||||| |||||||||||||||||| | ||||||||||| ||||    
42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctc 42694484  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 627
Target Start/End: Complemental strand, 9603168 - 9603101
Alignment:
560 atcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctctta 627  Q
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9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctctta 9603101  T

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