View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_2D_low_9 (Length: 448)
Name: NF1264_2D_low_9
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 34931416 - 34931838
Alignment:
| Q |
19 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34931416 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
34931515 |
T |
|
| Q |
119 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
34931516 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccatgacatcttggccatacccaagtttct |
34931615 |
T |
|
| Q |
219 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34931616 |
cctacaatgtttgtacaacaattaagatgctatcgtgattgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
34931715 |
T |
|
| Q |
319 |
caaatgttatcagctgattcgtacagttcctgaagcacattgattgtnnnnnnntaacatagttcttatatacaatatacatactcaccaattttgggtg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34931716 |
caaatgttatcagctgattcgtacagttcgtgaagcacattgattgtaaaaaaataacatagttcttatatacaatatacatactcaccaattttgggtg |
34931815 |
T |
|
| Q |
419 |
tttcttgttgaaggctatcacat |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34931816 |
tttcttgttgaaggctatcacat |
34931838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 34926509 - 34926924
Alignment:
| Q |
19 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
118 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||| | |||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
34926509 |
aggataacctccaatggcaagtatgttactaaaggatgccaaaggtattaccacagcatcaagtttatttcttttcatcagtttttcaaacccattctgt |
34926608 |
T |
|
| Q |
119 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
218 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34926609 |
gacgatcttgtcatatttaataatgcttgtttctctgctttcccaattccgtttgtcttttcagcttgcaccatgagatcttggccatactcaagtttct |
34926708 |
T |
|
| Q |
219 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaatgagaaatgctttatgtaacaaataggcatggcacaaatagtaacaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34926709 |
cctacaatgtttatacaacaattaagatgctatcgtgatcaatgttcatagctg-ga----ctttatgtaacaaataggcatggcacaaatagtaacaat |
34926803 |
T |
|
| Q |
319 |
caaatgttatcagctgattcgtacagttcctgaagcacattgattgtnnnnnnntaacatagttcttatatacaatatacatactcaccaattttgggtg |
418 |
Q |
| |
|
||||||||||||| |||||| ||||| || ||||||| | || | || |||||||||||| |||| | ||||||||||||||| |||||||||| |
|
|
| T |
34926804 |
caaatgttatcagttgattcttacag-tcgtgaagcaaactggtcgt-aaaaaataacatagttctaatattctatatacatactcaccgattttgggtg |
34926901 |
T |
|
| Q |
419 |
tttcttgttgaaggctatcacat |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34926902 |
tttcttgttgaaggctatcacat |
34926924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 34896321 - 34896559
Alignment:
| Q |
19 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
34896321 |
aggataacctccaatagcaagtatgtgactaaaggaccaaaaaggtgttactacagcatcaagtttatttattttcatcagtttctcaaacccattttct |
34896420 |
T |
|
| Q |
119 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
34896421 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccatgacatcttggccatactccattttct |
34896520 |
T |
|
| Q |
219 |
cctacaatgtttatacaacaattaagatgctatcgtgat |
257 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
34896521 |
cctacaacttttatataacaattaagatcctatcgtgat |
34896559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 34909811 - 34910061
Alignment:
| Q |
19 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
118 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
34909811 |
aggataacctccaatagccagtatgtggctaaaggaccaaaaaggtgtcattacagcatcaagtttatttattttcatcagtttctcaaacccattttct |
34909910 |
T |
|
| Q |
119 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatactcaagtttct |
218 |
Q |
| |
|
|||||||||| ||| || |||||||||| |||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
34909911 |
gaccatcttgacatattcaataatgcttctttttctgctttcccaaaaccgtttgtcttttcagcttgcaccaatacatcttggccatactccattttct |
34910010 |
T |
|
| Q |
219 |
cctacaatgtttatacaacaattaagatgctatcgtgatcgatgttaattaa |
270 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||| |||||| || |||||||| |
|
|
| T |
34910011 |
cctacaat-tttatacaacaattcagattctatagtgatcaatattaattaa |
34910061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 34919766 - 34919992
Alignment:
| Q |
19 |
aggataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcagtttctcaaacccattttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||||||| |||| |||| |||||||||||||||||||||| | |
|
|
| T |
34919766 |
aggataacctccaatagcaagtatgctactaaaggatgaaaaaggcgttaccacagcatcaagttcatttgtttttatcagtttctcaaacccattttct |
34919865 |
T |
|
| Q |
119 |
gaccatcttgtcatgtttaataatgcttgtttttctgctttaccaattccatttgtcttttcagcttgcaccataacatcttggccatac---tcaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | | | |||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||| |
|
|
| T |
34919866 |
gaccatcttgtcatgtttaataatgcttctttctgtatacttccaattccatttgtcttttcagcttgcaacatgatatcttggccatacttatcaagtt |
34919965 |
T |
|
| Q |
216 |
tctcctacaatgtttatacaacaatta |
242 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
34919966 |
cctcctacaatttttatacaacaatta |
34919992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 34896620 - 34896656
Alignment:
| Q |
405 |
accaattttgggtgtttcttgttgaaggctatcacat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34896620 |
accaattttgggtgtttcttgttgaaggctatcacat |
34896656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 34914075 - 34914153
Alignment:
| Q |
21 |
gataacctccaatagcaagtatatggctaaaggaccaaataggtgttactacagcatcaagtttatttcttttcatcag |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||| ||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
34914075 |
gataacctccaatagcaagtatgctactaaagaatgaaaaaggtgttaccacaggatcaagtttatttattttcatcag |
34914153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 34920055 - 34920097
Alignment:
| Q |
399 |
atactcaccaattttgggtgtttcttgttgaaggctatcacat |
441 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34920055 |
atacttaccaattttgggtttttcttgttgaaggctatcacat |
34920097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 34910117 - 34910153
Alignment:
| Q |
405 |
accaattttgggtgtttcttgttgaaggctatcacat |
441 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34910117 |
accaattttgggtgtttctcattgaaggctatcacat |
34910153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University