View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1265-Insertion-1 (Length: 770)
Name: NF1265-Insertion-1
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265-Insertion-1 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 347 - 770
Target Start/End: Original strand, 30413150 - 30413573
Alignment:
| Q |
347 |
atagaaaagattgtgagatcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413150 |
atagaaaagattgtgagatcattggaaccacttcagaattctaatgacccaattagtggtgtggagagctcttaatctcaacatcaaacaaccatcaaag |
30413249 |
T |
|
| Q |
447 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413250 |
tataaagggtcatatatcaagcattagtggtttagaacaacattgaaaaagagccaaatgtatctttaagtgaagaaataaatgaaatgtcataatagca |
30413349 |
T |
|
| Q |
547 |
acttcaatggaagtatctaagaaggtttaatgggagaaaggatttgttcgttattttttctactcaaaattggaagaacttgaggtggcaaagtaggttg |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30413350 |
acttcaatggaagtatctaagaaggtttaatgggagaaaggatttgttcgttattttttctactcaaaattggaagaacttaaggtggcaaagtaggttg |
30413449 |
T |
|
| Q |
647 |
catcaannnnnnnnaaagtagctaaattattatttggtagcattgaaataaaagattggttcatataaatatgaaagtgataagtgttgctcttttttga |
746 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30413450 |
catcaattttttttaaagtagcttaattattatttggtagcattgaaataaaagattggttcatataaatatgaaagtgataagtgttgctcttttttga |
30413549 |
T |
|
| Q |
747 |
caaaaagtgtgggttagagttgca |
770 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30413550 |
caaaaagtgtgggttagagttgca |
30413573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 36 - 426
Target Start/End: Original strand, 30412019 - 30412408
Alignment:
| Q |
36 |
cctacaattttactcctaaccatttatttcattgtattttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattgga |
135 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||| ||||||||||| | | || ||||| ||| ||||||||||| ||| ||||||||||| |||| |
|
|
| T |
30412019 |
cctacaattttactcctaacctttt-tctcattgtcatttttgtgaagattacctaaccaaggagaatgatgtatacaattttggggttgttctcctgga |
30412117 |
T |
|
| Q |
136 |
aatcatgttaggcaaacatgcattggataaaaacaggccgttaggggaacaaaatttagtcgactgggcgagatttttactcatcagcaaatgcaagatc |
235 |
Q |
| |
|
||| |||| |||||||| |||| |||||||||||| |||| | |||||||||||| || || ||||| | ||||||| || |||| || ||| |
|
|
| T |
30412118 |
aattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccattactcaacaacaaacataaaatc |
30412217 |
T |
|
| Q |
236 |
tctcaagccatggatgattatatagaaggtgaatattcgtcgtcggaagcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaat |
335 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||| || ||| || ||||||||| ||||||| ||| | |||||||||||||| |||| |||| ||| |
|
|
| T |
30412218 |
tctcaagttatggatgttcgtatagaaggtgaatactcatcgcgtgatgcaatgaaattagctcatattataattcaatgtctgtctgaaaaaccagaat |
30412317 |
T |
|
| Q |
336 |
atagaccaagcatagaaaagattgtgagatcattggaaccacttcagaattctaatgacacaattagtggtgtggagagctcttaatctca |
426 |
Q |
| |
|
||||||||| ||| || |||||||||||||| |||| | ||||||| |||| |||||||| | |||| || ||||||||||||||| |
|
|
| T |
30412318 |
atagaccaaaaatacaagagattgtgagatcactggagcaacttcagcattccgatgacacagtaggtggagtacggagctcttaatctca |
30412408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 72 - 395
Target Start/End: Original strand, 30423208 - 30423531
Alignment:
| Q |
72 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcatgttaggcaaacatgcattggataaaaacag |
171 |
Q |
| |
|
|||||||||||||||| || || |||||||| ||||| |||||||||||||||||||| | ||||| |||| |||||| | || ||||||||||||| | |
|
|
| T |
30423208 |
ttttttgtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccg |
30423307 |
T |
|
| Q |
172 |
gccgttaggggaacaaaatttagtcgactgggcgagatttttactcatcagcaaatgcaagatctctcaagccatggatgattatatagaaggtgaatat |
271 |
Q |
| |
|
|||| || || || ||||||| | ||||| | |||||||| |||||| | ||||| ||||||| ||||||| | ||||||||| |||| |
|
|
| T |
30423308 |
accgtctggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaaggccaatac |
30423407 |
T |
|
| Q |
272 |
tcgtcgtcggaagcaatgaaagtagctcacattgtgattcaatgtctgtcggaaagaccaaaatatagaccaagcatagaaaagattgtgagatcattgg |
371 |
Q |
| |
|
|| ||| |||||||| ||||||||||| ||| |||| ||||||||||| | || |||||||||||||| ||| || || | |||||||| |||| |
|
|
| T |
30423408 |
tcatcgcgtgaagcaattaaagtagctcatgttgcaattcgatgtctgtcggcagaacaaaaatatagaccaaacattgacgaggtggtgagatcgttgg |
30423507 |
T |
|
| Q |
372 |
aaccacttcagaattctaatgaca |
395 |
Q |
| |
|
||| ||||||| |||| ||||||| |
|
|
| T |
30423508 |
aacaacttcaggattccaatgaca |
30423531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 30409565 - 30409667
Alignment:
| Q |
72 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcatgttaggcaaacatgcattggataaaaacag |
171 |
Q |
| |
|
|||||||||||||||| || || ||| |||||||| |||||| ||| ||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||| |
|
|
| T |
30409565 |
ttttttgtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttctcttggaaattatgtcaggcaaacatgcattagataacaacag |
30409664 |
T |
|
| Q |
172 |
gcc |
174 |
Q |
| |
|
||| |
|
|
| T |
30409665 |
gcc |
30409667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 30405448 - 30405556
Alignment:
| Q |
66 |
attgtattttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcatgttaggcaaacatgcattggataa |
165 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| || |||| |||||||||| | |
|
|
| T |
30405448 |
attgtcttttttgtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctggaaattatgtcgggaaaacgtgcattggatta |
30405547 |
T |
|
| Q |
166 |
aaacaggcc |
174 |
Q |
| |
|
|||||||| |
|
|
| T |
30405548 |
taacaggcc |
30405556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 30402368 - 30402459
Alignment:
| Q |
72 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgttctattggaaatcatgttaggcaaacatgcattggat |
163 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||| |||| |||||| |||| ||||||| |||| ||| |||| ||||| |||| |
|
|
| T |
30402368 |
ttttttgtgaaggccacttgaccaaaaagagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgcatgggat |
30402459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 34150918 - 34150972
Alignment:
| Q |
72 |
ttttttgtgaaggtcaactgaccaaaaagagtgatgtatacagtttcggggttgt |
126 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34150918 |
ttttttgtacaggtcatttgaccaaaaagagtgatgtatacagtttcggcgttgt |
34150972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University