View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1265-Insertion-3 (Length: 271)
Name: NF1265-Insertion-3
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1265-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 1243466 - 1243729
Alignment:
| Q |
8 |
agaattgctctagcagtaatgaatggagtttcgtaaaatttgaagtaaatttaacgacataggttgttattagttcaaagttttctatatacgaattatt |
107 |
Q |
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| T |
1243466 |
agaattgctctagaagtaatgaatggagtttcgtaaaatttgaagtaaatttaacgacataggttgttattagttcaaagttttctatatacgaattagt |
1243565 |
T |
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| Q |
108 |
tcattgaattttgacaattcgattaacaatatccagtctttgtattttgattggtagttaatggaaagtactcgttcacatttataagttggatcaatta |
207 |
Q |
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| T |
1243566 |
tcattgaattttgacaattcgattaacaatatccggtctttgtattttgattggtagttaatggaaagtactcgttcacatttataagttggatcaatta |
1243665 |
T |
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| Q |
208 |
cttcccctcgtgtacctcactaggtaacatttgtttatattttttagattgaaatataagccga |
271 |
Q |
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| T |
1243666 |
cttcccctcatgtacctcactaggtaacatttgtttatattttttagattgaaatttaagccga |
1243729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 42008125 - 42008388
Alignment:
| Q |
8 |
agaattgctctagcagtaatgaatggagtttcgtaaaatttgaagtaaatttaacgacataggttgttattagttcaaagttttctatatacgaattatt |
107 |
Q |
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| T |
42008125 |
agaattgctctagaagtaatgaatggagtttcgtaaaatttgaagtaaatttaacgatataggttgttattagttcaaagttttctatatacgaattagt |
42008224 |
T |
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| Q |
108 |
tcattgaattttgacaattcgattaacaatatccagtctttgtattttgattggtagttaatggaaagtactcgttcacatttataagttggatcaatta |
207 |
Q |
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| T |
42008225 |
tcattgaattttgacaattcgattaacaatatccggtctttgtattttgatcggtagttaatggaaagtactcgttcacatttataagttggatcaatta |
42008324 |
T |
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| Q |
208 |
cttcccctcgtgtacctcactaggtaacatttgtttatattttttagattgaaatataagccga |
271 |
Q |
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| T |
42008325 |
cttcccctcatgtacctcactaggtaacatttgtttatactttttagattgaaatttaagccga |
42008388 |
T |
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