View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1265-Insertion-4 (Length: 737)

Name: NF1265-Insertion-4
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1265-Insertion-4
NF1265-Insertion-4
[»] chr5 (1 HSPs)
chr5 (5-737)||(3289022-3289752)


Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 5 - 737
Target Start/End: Original strand, 3289022 - 3289752
Alignment:
Q  5 acaagaaggaagtagcaaaaacagtacttcaaacatggctgctgctgctacgttgtacttggcaaaaccatgttgttctactcccaaaatctcatttcct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3289022 acaagaaggaagtagcaaaaacagtacttcaaacatggctgctgctgctacgttgtacttggcaaaaccatgttgttctactcccaaaatctcatttcct 3289121  T
Q  105 tcaaattcaagagttgtcaataacagtaggtgtcgatttggaacattaaaaccgaaagcgggtctctcccatttcctcaacattgtagaaaccacttcct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3289122 tcaaattcaagagttgtcaataacagtaggtgtcgatttggaacattaaaaccgaaagcgggtctctcccatttcctcaacattgtagaaaccacttcct 3289221  T
Q  205 cgtacatccaacttccacttcaacttgaacttcaagaaccatccaatgcactgtctttacccacttgggctgttcatgtctccagcgtcgttgaatggta 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3289222 cgtatatccaacttccacttcaacttgaacttcaagaaccatccaatgcactgtctttacccacttgggctgttcatgtctccagcgtcgttgaatggta 3289321  T
Q  305 ttaacttcacttttatcttatcccttctatctagtattttaatcttcatttttgtgnnnnnnnnnattgnnnnnnnnnnnnggattattgctatggcttt 404  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||            |||||||||||||||||||    
T  3289322 ttaacttcacttttatcttatcccttctatctactattttaatcttcatttttgtg--tttttttattgaaaaataaaaaaggattattgctatggcttt 3289419  T
Q  405 ggtgtggcaatatggggagaaatctgggtatgaagcttggaagggtctttcttgggggatggtaagtcttttcattttaattcttt-tnnnnnnnnttat 503  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          ||||    
T  3289420 ggtgtggcaatatggagagaaatctgggtatgaagcttggaagggtctttcttgggggatggtaagtcttttaattttaattctttaaaaaaaaaattat 3289519  T
Q  504 tattattattttggcacaaaataagataacaaattcagtgattaacgtagttgaggtagttcaaattgtttgttgttgcttgaaaacatacatgttggag 603  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3289520 tattattattttgacacaaaataagataacaaattgagtgattaacgtagttgaggtagttcaaattgtttgttgttgcttgaaaacatacatgttggag 3289619  T
Q  604 aagtcccacatttcttataatttttaaggaagaaggagaccaagactatttatataacactttagactagtatctgacnnnnnnncttttctcttgcgct 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  3289620 aagtcccacatttcttataatttttaaggaagaaggagaccaagactatttatataacactttagactagtatctgac-ttttttcttttctcttgcgct 3289718  T
Q  704 cttttcttagagtgttgtgagatgtagttaggta 737  Q
    ||||||||||||||||||||||||||||||||||    
T  3289719 cttttcttagagtgttgtgagatgtagttaggta 3289752  T

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