View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1265-Insertion-5 (Length: 716)

Name: NF1265-Insertion-5
Description: NF1265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1265-Insertion-5
NF1265-Insertion-5
[»] chr4 (1 HSPs)
chr4 (8-716)||(50325325-50326038)


Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 716
Target Start/End: Complemental strand, 50326038 - 50325325
Alignment:
Q  8 cctgcagccaaccctgcatttttcgaaaaatttgaaggat----catttccacaatccttctagataattcttatacgcaataattaaagaaaataagtt 103  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50326038 cctgcagccaaccctgcatttttcgaaaaatttgaaggatatatcatttccacaatccttctagataattcttatacgcaataattaaagaaaataagtt 50325939  T
Q  104 attgaacgtaaacacatgtagcacgtgctacgcgaaatgtagacatactcgcatatgctatacaagttcagcattaataaattattacataaaactataa 203  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50325938 attgaacgtaaacacatgtggcacgtgctacgtgaaatgtggacatactcgcatatgctatacaagttcagaattaataaattattacataaaactataa 50325839  T
Q  204 aatagtccctaattattggaaaattgccaaattcacatattagatagaagcacacgaggtctcttcaagttgagagaatttatgattaccccattggaag 303  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50325838 aatagtccctaattattggaaaattgccaaattcacatattatatagaagcacacgaggtctcttcaagttgagagaatttatgattaccccattggaag 50325739  T
Q  304 gattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaaagacagaacataacataaaaaggccagcatgtttttgcatat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50325738 gattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaaagacagaacataaaataaaaaggccagcatgtttttgcatat 50325639  T
Q  404 attg-aaaagtacgatttcacgtaagcaactgtaaggcaacaactctcctgtacatatgaactcaccattgcctcaatggatttactgctggtctctcct 502  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  50325638 attgaaaaagtacaatttcacgtaagcaactgtaaggcaacaactctcctgtacacatgaactcaccattgcctcaatagatttactgctggtctctcct 50325539  T
Q  503 gtatgtgcaaaaaatcgaaagaaaatgttgttactattttaactcattttaagattggtnnnnnnnnnnntctcatatctagattcatattaaatatcta 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  50325538 gtatgtgcaaaaaatcgaaagaaaatgttgttactattttaactcattttaagattggtaaaaaaaaaaatctcatatctagattcatattaaatatcta 50325439  T
Q  603 tgctctgaatttactggttcagcatagtttannnnnnnngtaattttagtatacctctaagaccatgaaaacgatttttcttggctccagatatttctgg 702  Q
    ||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50325438 tgctctgaatttactggttcagcatagttaattttttttgtaattttagtatacctctaagaccatgaaaacgatttttcttggctccagatatttctgg 50325339  T
Q  703 aggcattccaccag 716  Q
    ||||||||||||||    
T  50325338 aggcattccaccag 50325325  T

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