View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_high_9 (Length: 242)
Name: NF12650_high_9
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 17658618 - 17658838
Alignment:
| Q |
19 |
gcttgctctatgcgtcttgtgcagatgtagcggttaataaattttggttgtttnnnnnnnng--ctataacaggaaattgaattgatcttattggaattt |
116 |
Q |
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| T |
17658618 |
gcttgctctgtgcgtcttgtgcagatgtagcggttaataaattttggttgtttcaaaaaaaaaactataacaggaaattggattgatcttgttggaattt |
17658717 |
T |
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| Q |
117 |
taggtgggttggatgtatggaacaatgacagaagatatactaactgggttgacgatacacaaaaaaggttagagatcggaattatgtacaccggatccaa |
216 |
Q |
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| T |
17658718 |
taggtgggttggatgtatggaacaatgactgaagatatactaactgggctgacgatacacaaaaaaggttggagatcggaattatgtacaccggatccaa |
17658817 |
T |
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| Q |
217 |
tagccttcacaggttctgctc |
237 |
Q |
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| T |
17658818 |
tagccttcacaggttgtgctc |
17658838 |
T |
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