View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_1 (Length: 532)
Name: NF12650_low_1
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 37504067 - 37503569
Alignment:
| Q |
18 |
agaattgtccgctgtgtcgtgcacctgtgatcaatgatgctgcagaggtgagtatcacagtcactgatcaacttgattcaatttcaaatatttctgttga |
117 |
Q |
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| T |
37504067 |
agaattgtccgctgtgtcgtgcacctgttatcaatgatgctgcagaggtgagtatcacagtcactgatcaacttgattcaatttcaaatatttctggtga |
37503968 |
T |
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| Q |
118 |
gactcagaatcaaggacatacagaaagctctgataatgctgttgggagaggattagggtcacataatgtaggagagtttgatattattattagagtagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37503967 |
cactcagaatcaaggacatacagaaagctctgataatgctgttgggagaggattagggtcacataatgtaggagagtttgatattattattagagtagat |
37503868 |
T |
|
| Q |
218 |
aatgatgatggtgattctggtgtatcatctagtgaaagaccaaataaaaataatattgcttaatttgttagcaaaataaatggaagaagaaatacaacct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37503867 |
aatgatgatggtgattctggtgtatcatctagtgaaagaccaaataaaaataatattgcttaatttgttagcaaaataaatggaagaggaaatacaacct |
37503768 |
T |
|
| Q |
318 |
gtgaagaggaaattttccatggaatcatcttctacttcaataatatacatttcatgatctgtcaagtttaaagatcaatcaatggtgctgattaaaggat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
37503767 |
gtgaagaggaaattttccatggaatcatcttctacttcaataatatacatttcatgatctgtcaagtttaaagatcaatgaatggtgctgattcaaggat |
37503668 |
T |
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| Q |
418 |
tattaaggaatgggtattgctctacnnnnnnngcatgtcttctatttacaaattactagtccatctttcagttaaagactttccatatggttgctttgtg |
517 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
37503667 |
tattaaggaatgggtattgttctactttttttgcatgtcttctatttacaaa-tactagtccatctttcagtttaagactttccatatgcttgctttgtg |
37503569 |
T |
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