View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_10 (Length: 280)
Name: NF12650_low_10
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34779375 - 34779519
Alignment:
| Q |
1 |
agttagccatttatatcgcatcagagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgc |
100 |
Q |
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| T |
34779375 |
agttaaccatttatatcgcatcagagaacacggccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgc |
34779474 |
T |
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| Q |
101 |
catcttaaagtgcttcattgttacaacggaagcatcaaagctttc |
145 |
Q |
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| T |
34779475 |
catcttaaagtgcttcattgttacaacggaagcatcaaagctttc |
34779519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 4108064 - 4108163
Alignment:
| Q |
167 |
tatgtacatttatttcatcaatgttcctacatcaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
266 |
Q |
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| T |
4108064 |
tatgtacatttatttcatcaatgttcctacatgaattatcatgagtaaaaaattctaccttacataacatcgttgctactataccaacacctcatacagt |
4108163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 34682979 - 34682858
Alignment:
| Q |
24 |
gagaacacagccctttgaaattttgctgacagcttttggtaggactgaaattctgagggctgaacctgtttgattgccatcttaaagtgcttcattgtta |
123 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
34682979 |
gagaacacagccctttgaaattttgctgacaacttttgataggactgagtttctgtgggctgaacttgttcaattgccgtcttaaagtgcttcattgtta |
34682880 |
T |
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| Q |
124 |
caacggaagcatcaaagctttc |
145 |
Q |
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| T |
34682879 |
caacggaagcatcaaagttttc |
34682858 |
T |
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