View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12650_low_13 (Length: 240)

Name: NF12650_low_13
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12650_low_13
NF12650_low_13
[»] chr2 (9 HSPs)
chr2 (1-232)||(40626941-40627172)
chr2 (19-175)||(12027329-12027484)
chr2 (16-86)||(6458336-6458406)
chr2 (20-139)||(40053775-40053893)
chr2 (23-88)||(1529355-1529420)
chr2 (21-137)||(1345326-1345441)
chr2 (111-139)||(1529434-1529462)
chr2 (67-139)||(3044459-3044531)
chr2 (20-88)||(31514493-31514561)
[»] chr7 (7 HSPs)
chr7 (16-136)||(29127450-29127570)
chr7 (40-198)||(37970425-37970583)
chr7 (18-139)||(2333256-2333377)
chr7 (17-174)||(39595401-39595557)
chr7 (117-198)||(42078112-42078193)
chr7 (19-147)||(44108478-44108606)
chr7 (22-172)||(41481759-41481907)
[»] chr5 (7 HSPs)
chr5 (18-198)||(26449048-26449227)
chr5 (18-178)||(9198021-9198183)
chr5 (19-174)||(13416285-13416440)
chr5 (16-139)||(34732718-34732841)
chr5 (16-135)||(39466643-39466762)
chr5 (18-157)||(32528944-32529083)
chr5 (104-139)||(42458811-42458846)
[»] chr1 (12 HSPs)
chr1 (17-139)||(4075637-4075759)
chr1 (20-138)||(32712046-32712164)
chr1 (47-139)||(42471273-42471365)
chr1 (17-197)||(19806182-19806355)
chr1 (22-92)||(9381885-9381955)
chr1 (46-173)||(44108879-44109006)
chr1 (21-139)||(5786324-5786442)
chr1 (19-82)||(49288373-49288436)
chr1 (17-137)||(30952147-30952266)
chr1 (48-88)||(6769009-6769049)
chr1 (102-138)||(26795484-26795520)
chr1 (118-174)||(47142973-47143029)
[»] chr8 (6 HSPs)
chr8 (16-176)||(39284568-39284727)
chr8 (22-97)||(26544404-26544479)
chr8 (35-198)||(33304045-33304206)
chr8 (17-81)||(22573794-22573858)
chr8 (19-139)||(23586412-23586532)
chr8 (48-88)||(31735069-31735109)
[»] chr3 (6 HSPs)
chr3 (29-175)||(40417621-40417766)
chr3 (42-198)||(45817951-45818106)
chr3 (90-173)||(20525556-20525639)
chr3 (7-146)||(48935675-48935819)
chr3 (65-160)||(32491573-32491668)
chr3 (17-128)||(39794559-39794670)
[»] chr6 (5 HSPs)
chr6 (20-99)||(6149156-6149235)
chr6 (83-198)||(16599324-16599437)
chr6 (29-76)||(4086959-4087006)
chr6 (48-103)||(17991061-17991116)
chr6 (65-127)||(12771330-12771391)
[»] chr4 (9 HSPs)
chr4 (104-198)||(14518538-14518632)
chr4 (19-168)||(22205323-22205472)
chr4 (16-86)||(14518662-14518732)
chr4 (40-136)||(50876912-50877008)
chr4 (17-126)||(26634551-26634666)
chr4 (50-139)||(34667131-34667220)
chr4 (46-86)||(2184046-2184086)
chr4 (18-88)||(33235200-33235270)
chr4 (48-140)||(19180623-19180715)
[»] scaffold0060 (1 HSPs)
scaffold0060 (17-90)||(3304-3377)
[»] scaffold0377 (1 HSPs)
scaffold0377 (117-198)||(11911-11992)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40627172 - 40626941
Alignment:
Q  1 ctccaatccatttacagtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagat 100  Q
    ||||||| ||||||  | |||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||||| | ||||||     
T  40627172 ctccaattcatttatggcccgtttggtgcgtaggatatgatagagacatcataggattagaagttggataaggatataatatgatagtaacaagatagac 40627073  T
Q  101 acttatcatttcatgtgtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgatnn 200  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||      
T  40627072 acttatcatttcatgtgtttggtacacacatgataagaaggaggatattcttattttattatatcatgtgtttgatgctcacttgttcttgacatgataa 40626973  T
Q  201 nnnnnttaacaaccttgcaatatattcatctc 232  Q
         ||||||||| ||||| |||||||||||    
T  40626972 aaaaattaacaaccctgcaacatattcatctc 40626941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 12027484 - 12027329
Alignment:
Q  19 ccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgt 118  Q
    ||||||| ||| || ||||||||||||| | |||| ||| |||||||||||||||||||||||||||||| |||  ||| | | ||||||| ||||||||    
T  12027484 ccgtttgatgcacatgatataatagagataagatatgataagaagctggataaggatatgatatgatagtgatataata-acatttatcatgtcatgtgt 12027386  T
Q  119 ttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttga 175  Q
    || | ||||||||||||| || || |||||  |||||||||| ||||| ||||||||    
T  12027385 tttgggcacacatgataaaaaagaggatatcattattttatcctatcacgtgtttga 12027329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 6458406 - 6458336
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgata 86  Q
    |||||||||||||| || ||||| ||| | |||||||||||| ||||| ||||||||||||||||||||||    
T  6458406 agtccgtttggtgcacatgatattataaacacatgataggataagaagatggataaggatatgatatgata 6458336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 40053775 - 40053893
Alignment:
Q  20 cgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtt 119  Q
    ||||||||||| | ||||  ||||||| | |||| ||| |||| |||||||||||||||||||||||| || | |||| | | ||||| | |||  ||||    
T  40053775 cgtttggtgcggatgataggatagagataagatatgataagaaactggataaggatatgatatgatagcaacaagata-acaattatcctatcacatgtt 40053873  T
Q  120 tggtgcacacatgataagaa 139  Q
    ||||||||||||||| ||||    
T  40053874 tggtgcacacatgattagaa 40053893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 1529355 - 1529420
Alignment:
Q  23 ttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagt 88  Q
    ||||||| || ||||| ||||||| |||||| ||||||||  ||||||| ||||||||||||||||    
T  1529355 ttggtgcacatgatatgatagagatatgataagattagaaaatggataaagatatgatatgatagt 1529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 1345441 - 1345326
Alignment:
Q  21 gtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgttt 120  Q
    |||||||||||| ||||  |||||||||||||| |||   || |||||||| || ||||||| |||  || | |||| | ||||||| | ||||||||||    
T  1345441 gtttggtgcgcatgataagatagagacatgatatgatattaaactggataaagacatgatataatataaacatgata-acacttatcctatcatgtgttt 1345343  T
Q  121 ggtgcacacatgataag 137  Q
      |||||||||||||||    
T  1345342 aatgcacacatgataag 1345326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 1529434 - 1529462
Alignment:
Q  111 tcatgtgtttggtgcacacatgataagaa 139  Q
    |||||||||||||||||||||||||||||    
T  1529434 tcatgtgtttggtgcacacatgataagaa 1529462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 3044459 - 3044531
Alignment:
Q  67 gataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaa 139  Q
    ||||| |||| | ||||||||||||| |||| | ||||||| | |||| |||||||| || ||||||||||||    
T  3044459 gataaagataggctatgatagtaatatgataaagacttatcctatcatatgtttggtacatacatgataagaa 3044531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 31514561 - 31514493
Alignment:
Q  20 cgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagt 88  Q
    |||||||||| || ||||| |||||||||||||| ||| | ||  ||||||| |||||||||| |||||    
T  31514561 cgtttggtgcacaagatatgatagagacatgatatgataaaaaattggataaagatatgatataatagt 31514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 29127570 - 29127450
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatg 115  Q
    ||||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||| | | ||||| | |||||    
T  29127570 agtccgtttggtgcgcatgatatgatagaaacatgataggataagaaactggataaggatatgatatgatagtgataggataaacatttatcttgtcatg 29127471  T
Q  116 tgtttggtgcacacatgataa 136  Q
     ||||||||||||| ||||||    
T  29127470 cgtttggtgcacacttgataa 29127450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 198
Target Start/End: Complemental strand, 37970583 - 37970425
Alignment:
Q  40 atagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaa 139  Q
    ||||||||| ||||| || ||||||||| |||||||| ||||||||||| | |||||| | | ||||| | |||||  |||||||||||| |||||| ||    
T  37970583 atagagacaagatagaataagaagctggttaaggataagatatgatagtgacaggataaacatttatcctatcatgcatttggtgcacacttgataaaaa 37970484  T
Q  140 ggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
     |||||||   |||||||||| ||||||| ||||| ||| |||||| | | ||||||||    
T  37970483 agatgatagcattattttatcctatcatgcgtttggtgcacacttgctatcgacatgat 37970425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 2333256 - 2333377
Alignment:
Q  18 tccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    ||||||||||| ||| ||||| ||||| | | ||||| || | |  ||||||||||||| |||| |||||||| | |||| | | ||||||| |||||||    
T  2333256 tccgtttggtgtgcatgatatgatagaaataggatagaataacatactggataaggataggatacgatagtaacaagataaaca-ttatcatatcatgtg 2333354  T
Q  118 tttggtgc-acacatgataagaa 139  Q
    |||||||| ||||||||||||||    
T  2333355 tttggtgcaacacatgataagaa 2333377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 39595557 - 39595401
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgt 116  Q
    ||||||||||| |||| |||| |||| ||| | ||||  || | ||| |||||||||||| |||| |||||| | | |||||  ||||||  | |||| |    
T  39595557 gtccgtttggtacgcatgatagaatatagataagatataataaaaagttggataaggata-gataggatagtgacatgatagtcacttatgctatcatat 39595459  T
Q  117 gtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttg 174  Q
    |||| ||||||||||||||||||  |||||||  |||||||||| | |||| ||||||    
T  39595458 gtttagtgcacacatgataagaatcatgatatcattattttatcctgtcatttgtttg 39595401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 42078193 - 42078112
Alignment:
Q  117 gtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    ||||||||||| |||||||||||  ||||||   |||||||||| |||||| | |||||||| || ||| | ||||||||||    
T  42078193 gtttggtgcacgcatgataagaaatatgataacattattttatcatatcatatttttgatgcacatttgctattgacatgat 42078112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 44108606 - 44108478
Alignment:
Q  19 ccgtttggtgcgc-aggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    ||||||||||||  ||||||| ||||| ||||||||| || ||| | || |||| |||| ||||||||||| | | |||| | | ||||| | |||||||    
T  44108606 ccgtttggtgcgttaggatatgatagaaacatgatagaataagaggttgaataaagataggatatgatagtgacaagatatacatttatcctatcatgtg 44108507  T
Q  118 tttggtgcacacatgataagaaggatgata 147  Q
     ||||| | ||||||||||||| |||||||    
T  44108506 -ttggtactcacatgataagaaagatgata 44108478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 41481759 - 41481907
Alignment:
Q  22 tttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttg 121  Q
    |||||||  |||||||| ||||||||| |||| ||||||||  || |||| |||| |||| | |||| | | |||||| ||||||| | ||||| |||||    
T  41481759 tttggtgaacaggatatgatagagacaggatatgattagaaaatgtataaagataggatagg-tagtgacatgatagacacttatcctgtcatgcgtttg 41481857  T
Q  122 gtgcacacatgataagaaggatgatattctt-attttatcgtatcatgtgtt 172  Q
    ||  ||||||||||| || |||||||   || |||||||| |||||||||||    
T  41481858 gt--acacatgataaaaaagatgataacatttattttatcatatcatgtgtt 41481907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 26449227 - 26449048
Alignment:
Q  18 tccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    ||||||| ||||||| ||||| | ||||| | ||||| |||||||  |||||||  ||||||||||||||| | | |||||| ||||||| | |||||      
T  26449227 tccgtttagtgcgcaagatatgacagagataggatag-attagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcatgct 26449129  T
Q  118 tttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    ||||||||||| |||||||||| ||||||||  |||||||||| ||||||||||||| ||| || ||||| ||||||||||    
T  26449128 tttggtgcacatatgataagaaagatgatatcattattttatcctatcatgtgtttgttgcacatttgttattgacatgat 26449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 9198183 - 9198021
Alignment:
Q  18 tccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    |||||||| || ||||||||| | ||||| |||||| ||||| ||  || |||| |||| ||||||||||  ||| |||||| ||||||||| ||||  |    
T  9198183 tccgtttgatgtgcaggatatgaaagagatatgataagattaaaaaatgaataaagataggatatgatagggataagatagacacttatcatgtcatacg 9198084  T
Q  118 tt--tggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgc 178  Q
    ||  ||||||||||||||||| || ||||||| | |||||||||| ||| |||||||||||||    
T  9198083 ttcttggtgcacacatgataaaaaagatgataatattattttatcatattatgtgtttgatgc 9198021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 13416285 - 13416440
Alignment:
Q  19 ccgtttggtgcgcaggatataatagagacatgataggattagaa-gctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    |||||||||||||| ||||| ||| | ||| |||||||| | || |||||||||||||||||||||||||| | | |||| | | ||||| | | |||||    
T  13416285 ccgtttggtgcgcatgatatgatataaacaagataggataaaaaagctggataaggatatgatatgatagtgacatgataaaca-ttatcctattatgtg 13416383  T
Q  118 tttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttg 174  Q
    ||||||||||| |||||||||| |||||||   |||||||||   ||||||||||||    
T  13416384 tttggtgcacatatgataagaaagatgatagcattattttatttcatcatgtgtttg 13416440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 34732841 - 34732718
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatg 115  Q
    ||||||||||||| ||| ||||| ||| ||| | |||| ||| ||||  |||||||| ||||||||||||| |||||||||| |   ||||| | ||| |    
T  34732841 agtccgtttggtgtgcatgatatgatatagataggatatgataagaaattggataagaatatgatatgataataataggataaactattatcctatcacg 34732742  T
Q  116 tgtttggtgcacacatgataagaa 139  Q
    ||||| ||||| ||||||| ||||    
T  34732741 tgttttgtgcaaacatgattagaa 34732718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 39466762 - 39466643
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatg 115  Q
    ||||||||||||||||| ||||| |||||| |   ||| ||| |||||  ||| || |||||||||||||||||| |||||| | | ||||||| |||      
T  39466762 agtccgtttggtgcgcatgatatgatagagtcggaatatgataagaagtaggacaaagatatgatatgatagtaacaggatatacatttatcatatcaca 39466663  T
Q  116 tgtttggtgcacacatgata 135  Q
    ||||||| ||||| ||||||    
T  39466662 tgtttggggcacatatgata 39466643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 32528944 - 32529083
Alignment:
Q  18 tccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtg 117  Q
    |||||||||||| || ||||| ||| ||||  |||| ||| | ||| | ||||| |||| ||||||||| | ||| |||||| ||||||  | |||||||    
T  32528944 tccgtttggtgcacatgatatgataaagacgggatatgataaaaagttagataaagataggatatgatactgatatgatagacacttattctatcatgtg 32529043  T
Q  118 tttggtgcacacatgataagaaggatgatattcttatttt 157  Q
    ||||||||| | ||||||| ||  |||||| | |||||||    
T  32529044 tttggtgcatagatgataacaaatatgatagtattatttt 32529083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 42458811 - 42458846
Alignment:
Q  104 tatcatttcatgtgtttggtgcacacatgataagaa 139  Q
    |||||| |||||||||||||||||||||||||||||    
T  42458811 tatcatgtcatgtgtttggtgcacacatgataagaa 42458846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 4075637 - 4075759
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgt 116  Q
    |||||||||||||||| ||||  |||||| || |||||||| ||||| |||| ||||||| ||||||||||| | | |||||| ||||||| | ||||||    
T  4075637 gtccgtttggtgcgcatgataggatagagtcaagataggataagaagatggacaaggataggatatgatagtgacaagatagacacttatcctatcatgt 4075736  T
Q  117 gtttggtgcacacatgataagaa 139  Q
    ||||||| |||||||| ||||||    
T  4075737 gtttggttcacacatggtaagaa 4075759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 32712046 - 32712164
Alignment:
Q  20 cgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtt 119  Q
    |||||||||| || ||||  ||||| |||||||| ||| || || |||||||| ||||||||||||||||| | |||||||||||||  | ||||| |||    
T  32712046 cgtttggtgcacatgataggatagacacatgatatgataaggagttggataagaatatgatatgatagtaacatgatagatacttatgctatcatgcgtt 32712145  T
Q  120 tggtgcacacatgataaga 138  Q
    |||||||||||||||||||    
T  32712146 tggtgcacacatgataaga 32712164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 42471273 - 42471365
Alignment:
Q  47 catgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaa 139  Q
    ||||||||||||||||  | ||||| |||||||||||||| | ||| |||||| | ||||||| |||||||||||||||||||||||||||||    
T  42471273 catgataggattagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcatgtgtttggtgcacacatgataagaa 42471365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 19806182 - 19806355
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgt 116  Q
    |||| |||||||| |||||||  ||||||||| |||||||| |||||||||||||||||| ||||||||||| | ||||||||       || ||| | |    
T  19806182 gtccatttggtgcacaggataggatagagacaagataggataagaagctggataaggataggatatgatagtgacaggataga-------cacttcttct 19806274  T
Q  117 gtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatga 197  Q
    ||||||||| ||| |||||||||  |||||| | |||||||||  ||||  ||||||| ||| |||||||| ||| |||||    
T  19806275 gtttggtgcgcacgtgataagaaatatgatagtattattttattatatctagtgtttggtgcacacttgttattgtcatga 19806355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 9381885 - 9381955
Alignment:
Q  22 tttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaata 92  Q
    ||||||||||| ||||  |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  9381885 tttggtgcgcatgataggatagagacctgagaggattagaagatggataaggatatgatatgatagtaata 9381955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 44109006 - 44108879
Alignment:
Q  46 acatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaaggatga 145  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||  ||||| ||  |||| |  | |||||||||||| ||||||||||||| ||  ||||    
T  44109006 acatgatatgataagaagttggataaggatatgatatgatagtgttaggacagtcacttgtgctatcatgtgtttggggcacacatgataataaacatga 44108907  T
Q  146 tattcttattttatcgtatcatgtgttt 173  Q
    ||   |||||||||| ||| ||||||||    
T  44108906 tagcattattttatcatattatgtgttt 44108879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 5786442 - 5786324
Alignment:
Q  21 gtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgttt 120  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||  ||| ||||  || | |||| | ||||||||| || |  ||||    
T  5786442 gtttggtgcgcaagataggataaagacatgataggattagaagctggataaggatagaataggataacaacatgataaacacttatcatatcttacgttt 5786343  T
Q  121 ggtgcacacatgataagaa 139  Q
    |||  ||||||||||||||    
T  5786342 ggtatacacatgataagaa 5786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 49288436 - 49288373
Alignment:
Q  19 ccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatat 82  Q
    |||||||||||||| ||||| ||| ||| |||||| ||| |||||||| |||||||||||||||    
T  49288436 ccgtttggtgcgcatgatatgatatagatatgatatgataagaagctgaataaggatatgatat 49288373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 30952266 - 30952147
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgt 116  Q
    |||||||||||||||| |||| ||||||||||||||| |||  |||  ||||||  || |||||||||||   ||| |||| | | ||||| | ||||||    
T  30952266 gtccgtttggtgcgcatgatagaatagagacatgatatgatatgaaattggatagagacatgatatgatatagatatgata-acatttatcctatcatgt 30952168  T
Q  117 gtttggtgcacacatgataag 137  Q
    ||||| ||| |||||||||||    
T  30952167 gtttgatgcgcacatgataag 30952147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 6769049 - 6769009
Alignment:
Q  48 atgataggattagaagctggataaggatatgatatgatagt 88  Q
    |||||||||| ||||| ||||||| ||||||||||||||||    
T  6769049 atgataggataagaagatggataaagatatgatatgatagt 6769009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 26795520 - 26795484
Alignment:
Q  102 cttatcatttcatgtgtttggtgcacacatgataaga 138  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26795520 cttatcctatcatgtgtttggtgcacacatgataaga 26795484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 47142973 - 47143029
Alignment:
Q  118 tttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttg 174  Q
    ||||||||||||||||||| ||  |||||||  |||||||||| |||||| ||||||    
T  47142973 tttggtgcacacatgataaaaatcatgatatcattattttatcttatcatatgtttg 47143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 39284727 - 39284568
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatg 115  Q
    ||||||||| |||||||||||  | ||||||||| ||||||||||||  ||||||| |||| |||| || ||||| | |||||| |  |||||| |||||    
T  39284727 agtccgtttagtgcgcaggatgga-tagagacataataggattagaaattggataaagataggataagaaagtaacatgatagacatctatcatatcatg 39284629  T
Q  116 tgtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgat 176  Q
    ||||||| ||| ||||||||| || || |||||  |||||||||| |||||| ||||||||    
T  39284628 tgtttggggcaaacatgataaaaatgaggatatcattattttatcatatcatatgtttgat 39284568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 26544479 - 26544404
Alignment:
Q  22 tttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggata 97  Q
    ||||||||| ||||||| ||||| |||||||||||| | | | |||||||||||||||||||||||| | ||||||    
T  26544479 tttggtgcgtaggatatgatagaaacatgataggataaaaggttggataaggatatgatatgatagtgacaggata 26544404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 33304045 - 33304206
Alignment:
Q  35 atataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgat 134  Q
    |||| ||||||||  |||| ||||||||  ||||||| |||| |||||||| || || ||||||| | |||| || | ||||||||| || |||||||||    
T  33304045 atatgatagagactagataagattagaaaatggataaagata-gatatgatcgtgat-ggatagacatttattatattatgtgtttgatgtacacatgat 33304142  T
Q  135 aagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    ||||| ||||||| | || ||||||| ||| || | |||||||| |||||||| || |||||||    
T  33304143 aagaaagatgataatattgttttatcttattatatatttgatgcacacttgttattaacatgat 33304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 22573858 - 22573794
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgata 81  Q
    |||||||||||||||| ||||  |||||||||||||| ||| |  |||| |||||||||||||||    
T  22573858 gtccgtttggtgcgcatgatagtatagagacatgatatgataaagagctcgataaggatatgata 22573794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 23586532 - 23586412
Alignment:
Q  19 ccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgt 118  Q
    ||||||| |||||| ||||  |||||||||||||||||||| ||| ||||||| |||| |||| ||||  || | |||| | | ||||||| || |  ||    
T  23586532 ccgtttgatgcgcaagataggatagagacatgataggattataagttggataatgataggataggataacaacatgataaacagttatcatatcttacgt 23586433  T
Q  119 ttggtgcacacatgataagaa 139  Q
    |||||  ||||||||||||||    
T  23586432 ttggtatacacatgataagaa 23586412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 31735109 - 31735069
Alignment:
Q  48 atgataggattagaagctggataaggatatgatatgatagt 88  Q
    |||||| ||| ||||| ||||||||||||||||||||||||    
T  31735109 atgataagataagaagatggataaggatatgatatgatagt 31735069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 40417766 - 40417621
Alignment:
Q  29 cgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcaca 128  Q
    |||||||||| ||||| ||  |||| ||| |||||||||||||||||| ||||||| ||| | | |||| | | ||||||| |||| ||||||||||||     
T  40417766 cgcaggatatgatagacacgggatatgataagaagctggataaggataggatatgacagtgacatgata-acatttatcatatcatatgtttggtgcacg 40417668  T
Q  129 catgataagaaggatgatattcttattttatcgtatcatgtgtttga 175  Q
    |||||||||||  ||||||   |||||||||| ||||||||||||||    
T  40417667 catgataagaaatatgatagcattattttatcatatcatgtgtttga 40417621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 45817951 - 45818106
Alignment:
Q  42 agagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaagg 141  Q
    |||||||||||| ||||||||| ||||||||||||| |||  ||| ||| | |||||| ||||||||| || |  |||||||  |||||||||||||| |    
T  45817951 agagacatgatatgattagaagttggataaggatattataaaataataacatgatagacacttatcatatcttacgtttggtatacacatgataagaaag 45818050  T
Q  142 atgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    | ||||   |||||||||| |||||| |||||| ||| || ||||| ||||| ||||    
T  45818051 a-gataacattattttatcctatcatatgtttggtgcacatttgttattgacgtgat 45818106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 20525639 - 20525556
Alignment:
Q  90 ataggatagatacttatcatttcatgtgtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgttt 173  Q
    ||||||||  || ||||||| |||||||||||||||| | |||||||||| ||||||||| |||||||||| |||||| |||||    
T  20525639 ataggatatgtatttatcatatcatgtgtttggtgcagatatgataagaaagatgatattattattttatcatatcatatgttt 20525556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 48935675 - 48935819
Alignment:
Q  7 tccatttacagtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagta-----ataggatagata 101  Q
    ||||||||  |||||||| |||| || |||||   |||||||||||||||||||||  ||| |||||||| |||| ||||| |     | | |||||| |    
T  48935675 tccatttagggtccgttttgtgcacatgatattcaagagacatgataggattagaaaatggttaaggataggataggataggatagtgacatgatagaca 48935774  T
Q  102 cttatcatttcatgtgtttggtgcacacatgataagaaggatgat 146  Q
    |||||| | |||||||||||||| |||||||||||||| ||||||    
T  48935775 cttatcctatcatgtgtttggtgtacacatgataagaaagatgat 48935819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 32491668 - 32491573
Alignment:
Q  65 tggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaaggatgatattcttattttatc 160  Q
    |||||||| ||||||||||||||||| ||| || | | ||||||| ||| |||||||||| ||||||||| ||||   ||||| | ||||||||||    
T  32491668 tggataagaatatgatatgatagtaacagggtaaacagttatcatatcacgtgtttggtgtacacatgattagaaaattgataatattattttatc 32491573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 39794559 - 39794670
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgt 116  Q
    |||||||| ||  ||| |||| |||||||| |||||| ||| | ||| |||||||||||| |||| |||||| | | ||||| |||||||  | ||||||    
T  39794559 gtccgtttagtaagcatgatagaatagagatatgatatgataaaaagttggataaggataagataggatagtgacatgatagttacttatgctatcatgt 39794658  T
Q  117 gtttggtgcaca 128  Q
    ||||| ||||||    
T  39794659 gtttgatgcaca 39794670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 6149156 - 6149235
Alignment:
Q  20 cgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggataga 99  Q
    |||||||||| || ||||  |||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||    
T  6149156 cgtttggtgcacatgataggatagagacatgataggataaaaagttggataaggatatgatatgatagtgataggataga 6149235  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 16599437 - 16599324
Alignment:
Q  83 gatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcac 182  Q
    ||||||||||||||| |  ||||||||||| | |||||||   |||||||||||||| |||||||   |||||| ||  ||||||||||||| ||| |||    
T  16599437 gatagtaataggataca--cttatcatttcctatgtttggctaacacatgataagaaagatgatagcattatttaattctatcatgtgtttggtgcacac 16599340  T
Q  183 ttgttcttgacatgat 198  Q
    ||| | ||||||||||    
T  16599339 ttgatattgacatgat 16599324  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 4086959 - 4087006
Alignment:
Q  29 cgcaggatataatagagacatgataggattagaagctggataaggata 76  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  4086959 cgcaggatatgatagacacatgatatgattagaagctggataaggata 4087006  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 17991061 - 17991116
Alignment:
Q  48 atgataggattagaagctggataaggatatgatatgatagtaataggatagatact 103  Q
    |||||||||||||||| ||||||| ||||| |||||||||| | | ||||||||||    
T  17991061 atgataggattagaagttggataaagatataatatgatagtgacatgatagatact 17991116  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 12771330 - 12771391
Alignment:
Q  65 tggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcac 127  Q
    |||||||||||| ||||||||| ||| | |||||| ||||||| | |||||||||||||||||    
T  12771330 tggataaggataggatatgataataacatgataga-acttatcctatcatgtgtttggtgcac 12771391  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 14518632 - 14518538
Alignment:
Q  104 tatcatttcatgtgtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    |||||| ||||||||||| ||| |||| |||||||| ||||||| | |||||||||| |||||| |||||| ||| |||||||| || |||||||    
T  14518632 tatcatatcatgtgtttgatgcgcacaagataagaaagatgataatattattttatcatatcatatgtttggtgcacacttgttattcacatgat 14518538  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 22205472 - 22205323
Alignment:
Q  19 ccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgt 118  Q
    |||||||||| ||||||||  |||||| || |||| ||| ||||||||||||| || | || |||| ||| | |||||| | | ||||| | ||||| ||    
T  22205472 ccgtttggtgtgcaggataggatagaggcaggatatgataagaagctggataaagaaaggaaatgacagtgagaggataaacatttatcctatcatgcgt 22205373  T
Q  119 ttggtgcacacatgataagaaggatgatattcttattttatcgtatcatg 168  Q
    |||||||| || |||||| || |||||||   ||||||||||||||||||    
T  22205372 ttggtgcatacttgataaaaaagatgatagcattattttatcgtatcatg 22205323  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 14518732 - 14518662
Alignment:
Q  16 agtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgata 86  Q
    ||||| |||||| |||| ||||| ||||||| ||| ||||||||||| || ||||||||||||||||||||    
T  14518732 agtccatttggtacgcaagatatgatagagatatgttaggattagaatctcgataaggatatgatatgata 14518662  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 50877008 - 50876912
Alignment:
Q  40 atagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataa 136  Q
    |||||||||||||  ||||| ||| ||||||||||||||||| |||| | | | |||| | || |||||| ||||| |||||||| |||||||||||    
T  50877008 atagagacatgatgtgattataagttggataaggatatgatacgataatgacatgatatacacctatcatatcatgcgtttggtggacacatgataa 50876912  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 26634551 - 26634666
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaataggatagat-------acttatcat 109  Q
    ||||||||| |||| | ||||| ||| ||||||||||| |||||||  ||||||| |||| ||||||||||| ||| |||||||       |||||||||    
T  26634551 gtccgtttgatgcgtatgatatgatacagacatgatagaattagaaaatggataaagata-gatatgatagtgataagatagatacaagacacttatcat 26634649  T
Q  110 ttcatgtgtttggtgca 126  Q
     ||||||||||||||||    
T  26634650 atcatgtgtttggtgca 26634666  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 34667220 - 34667131
Alignment:
Q  50 gataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaa 139  Q
    |||||||||| ||  ||||||| |||| ||||||||||| | | |||| ||| ||||| | |||| ||||||||||| ||||||||||||    
T  34667220 gataggattaaaaaatggataaagataggatatgatagtgacatgataaatatttatcctctcatatgtttggtgcaaacatgataagaa 34667131  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2184086 - 2184046
Alignment:
Q  46 acatgataggattagaagctggataaggatatgatatgata 86  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  2184086 acatgataggataagaagatggataaggatatgatatgata 2184046  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 33235200 - 33235270
Alignment:
Q  18 tccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagt 88  Q
    |||||||||||||||  |||  |||||||||||||| ||| |  || ||||||||||||||||| ||||||    
T  33235200 tccgtttggtgcgcataataggatagagacatgatatgataaagagttggataaggatatgataggatagt 33235270  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 19180623 - 19180715
Alignment:
Q  48 atgataggattagaagctggataaggatatgatatgatagtaataggatagatacttatcatttcatgtgtttggtgcacacatgataagaag 140  Q
    |||||||||| | || ||||||| | |||  |||||| ||| |||||||||| |||||||||  |||  ||||||| ||| ||||||||||||    
T  19180623 atgataggataaaaaactggataggaatagcatatgaaagtgataggatagacacttatcatagcatacgtttggttcacgcatgataagaag 19180715  T

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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 3304 - 3377
Alignment:
Q  17 gtccgtttggtgcgcaggatataatagagacatgataggattagaagctggataaggatatgatatgatagtaa 90  Q
    ||||||| |||| ||||||||  |||||||| ||||| ||||||||| ||||||||||||||||| ||||||||    
T  3304 gtccgttaggtgtgcaggataggatagagacgtgatacgattagaagttggataaggatatgataggatagtaa 3377  T

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Target: scaffold0377 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 11992 - 11911
Alignment:
Q  117 gtttggtgcacacatgataagaaggatgatattcttattttatcgtatcatgtgtttgatgctcacttgttcttgacatgat 198  Q
    ||||||||||| ||||||| |||  ||||||   |||||||||| |||||||| |||||||| || ||| | ||||||||||    
T  11992 gtttggtgcacgcatgataggaaatatgataacattattttatcatatcatgtttttgatgcacatttgctattgacatgat 11911  T

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