View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_14 (Length: 232)
Name: NF12650_low_14
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 14281988 - 14281789
Alignment:
| Q |
18 |
aaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaa |
117 |
Q |
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| T |
14281988 |
aaatggatgatagtgctgtgcaaagagatgagagttgtggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaa |
14281889 |
T |
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| Q |
118 |
tgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
217 |
Q |
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| T |
14281888 |
tgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 14320137 - 14319938
Alignment:
| Q |
18 |
aaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaa |
117 |
Q |
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|||||||||| | ||| ||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
14320137 |
aaatggatgagaatgcagtgcaaagagaggagaattgtgatggtgatgtagccgtggagataaaagatgggaaattttcatgggatgataaggatgagaa |
14320038 |
T |
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| Q |
118 |
tgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
217 |
Q |
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| T |
14320037 |
tgaggcgttgacagtggaagagttggtaattaagaaaggggaccgtgctgctattgtaggaactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 14303746 - 14303547
Alignment:
| Q |
18 |
aaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaa |
117 |
Q |
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|||||||||| | ||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14303746 |
aaatggatgagaatgcagtgcaaagagaggagaactgtaatggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatggatgagaa |
14303647 |
T |
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| Q |
118 |
tgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
217 |
Q |
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| T |
14303646 |
tgaggctttgcgagttaaggaattggtgattaagaaaggggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
14303547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 25884819 - 25884620
Alignment:
| Q |
18 |
aaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaa |
117 |
Q |
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|||||||||| | ||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
25884819 |
aaatggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaa |
25884720 |
T |
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| Q |
118 |
tgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
217 |
Q |
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|| || ||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
25884719 |
cgacgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
25884620 |
T |
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