View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_3 (Length: 423)
Name: NF12650_low_3
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 129 - 404
Target Start/End: Original strand, 7193987 - 7194259
Alignment:
| Q |
129 |
caatgaaagagaaagagtagacaagaatgaggtgnnnnnnnngttttagtctctaacataatggaccctgtatggttgggagattgacttggaaatagga |
228 |
Q |
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| T |
7193987 |
caatgaaagagaaagagtagacaagaatgaggtgttttttttgttttagtctctaacataatggacccggtatggttgggagattgacttggaaatagga |
7194086 |
T |
|
| Q |
229 |
actgatatagatctcacaatgaacatctattttccagcacaatgctccactatatatgtaatttaatttgtagtataattttcagtgtctttatgtttcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7194087 |
actgatatagatctcacaatgaacatctattttccagcacaatgctccactatatatgtaatttaatttgtagtatgattttcagtgtctttatgtttcc |
7194186 |
T |
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| Q |
329 |
taattatttctatctactcaattattattactactacttatttttgtgtaaaccctttagttctcaatagaaagag |
404 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7194187 |
taattatttccatctactcaattattat---tactacttatttttgtgtaaaccctttagttctcaatagaaagag |
7194259 |
T |
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