View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_4 (Length: 402)
Name: NF12650_low_4
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 14398838 - 14398468
Alignment:
| Q |
19 |
ctcaatccatgactaaatcatacacttcatgttcaggacaataatttgttgcagtcaaagaataacacaatcacttcacttcataaatcaaaacagtgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398838 |
ctcaatccatgactaaatcatacacttcatgttcaggacaatcatttgttgcagtcaaagaataacacaatcacttcacttcataaatcaaaacagtgtg |
14398739 |
T |
|
| Q |
119 |
aaatcaggtgatcactttccaacatcagctaatcaaatcccaaatacttcaaacaactttgatttattatttaatgtgttgagcatagtaaaccggattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398738 |
aaatcaggtgatcactttccaacatcagctaatcaaatcccaaacactttaaacaactttgatttattatttaatgtgttgagcatagtaaaccggattg |
14398639 |
T |
|
| Q |
219 |
ctatatactcctgtagttctatgtatattgtataattgatcctaaaattaatacatcatgctcaactcaactcacgtgacatgctaaccaatatccaaac |
318 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
14398638 |
ctatatactcctgtagttctatgtatattgcataattgatcctaaaattaaaccatcatgctcaactcaactcacatgacatgataaccaatatccaaat |
14398539 |
T |
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| Q |
319 |
ccaatcaatctacaattgtcaaaacaataaactatgtgatcatgttataactaattcatgtgtgtatatct |
389 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14398538 |
ccaatcaatctacaattgtcaaaacaataaactacgtgatcatgttataactaattcatgtgtgtatatct |
14398468 |
T |
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