View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12650_low_6 (Length: 366)
Name: NF12650_low_6
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 39533065 - 39533409
Alignment:
| Q |
1 |
gctcatatcctcagtgttaataggacaaaatggaggagttgtaattggtatcgagccataattcacatgaaatctattcatatcaacacctgcatgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39533065 |
gctcatatcctcagtgttaataggacaaaatggaggagttgtaattggtatcgagccataattcacatgaaatctattcatatcaacatctgcatgagga |
39533164 |
T |
|
| Q |
101 |
ttgaagtcattacggttaataggacaaaatggaggaggagttgatctattcctagcttcgttgtctcgaatgtcaaacacatgatgactcgttgatgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
39533165 |
ttgaagtcattacggttaataggacaaaatggaggaggagttgatctattcctagcttcgttgtctcgaatgtcgaacacacgatgactcgttgatgtat |
39533264 |
T |
|
| Q |
201 |
cacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgttaataggacaaaatggagtaggagttgaacttggaataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39533265 |
cacgagttgaatcccagttagcattgccagaagaaagaagcacgttcaaatcattattgttaataggacaaaatggagtaggagttgaacttggaataga |
39533364 |
T |
|
| Q |
301 |
gccatcattcacattgtgaaatctattcgtatgaccagttggacg |
345 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39533365 |
gccatcattcacactgtgaaatctattcgtatgaccagttggacg |
39533409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 39417006 - 39417335
Alignment:
| Q |
1 |
gctcatatcctcagtgttaataggacaaaatggaggagttgtaattggtatcgagccataattcacatgaaatctattcatatcaacacctgcatgagga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| | |||||||||| |
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|
| T |
39417006 |
gctcatgtcctcagtgttaataggacaaactggaggagttgtaattggtatcgagccatcattcaaatgaaatctattagtatcaacccttgcatgagga |
39417105 |
T |
|
| Q |
101 |
ttgaagtcattacggttaataggacaaaatggaggaggagttgatctattcctagcttcgttgtctcgaatgtcaaacacatgatgactcgttgatgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
39417106 |
ttgaagtcattacggttaataggacaaaatggaggaggagttgatctattcgcagcttcgttgtctcgaatgtcaaacacacgatgactcgttgatgtat |
39417205 |
T |
|
| Q |
201 |
cacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgttaataggacaaaatggagtaggagttgaacttggaataga |
300 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||| || |||||||||||||| |||||| |||||||| ||||||||||| |
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|
| T |
39417206 |
cacaagttgaatcccagttagcatttccagaagaaagaatcatgttcaaatcattac---------------atggaggaggagttgcgcttggaataga |
39417290 |
T |
|
| Q |
301 |
gccatcattcacattgtgaaatctattcgtatgaccagttggacg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39417291 |
gccatcattcacattgtgaaatctattcgtatgaccagttggacg |
39417335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 345
Target Start/End: Original strand, 39431916 - 39432117
Alignment:
| Q |
141 |
ttgatctattcctagcttcgttgtctcgaatgtcaaacacatgatgactcgttgatgtatcacgagttgaatcccagttagcattgtcagaagaaagaag |
240 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
39431916 |
ttgatctattcctagcttcactatctcgaatgttgaacacacgatgactcgttgatgtatcacgagttgaatcccaattagcatttccagaagaaagaat |
39432015 |
T |
|
| Q |
241 |
cacgttcaaatcattactgttaataggacaaaatggagtaggagttgaacttggaatagagccatcattcacattgtgaaatctattcgtatgaccagtt |
340 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| || |
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|
| T |
39432016 |
---gctcaaatcattattgttaataggatgaaatggaggacgagtttcactcggaatagagccatcattcacattgtgaaatctattcgtattaccactt |
39432112 |
T |
|
| Q |
341 |
ggacg |
345 |
Q |
| |
|
||||| |
|
|
| T |
39432113 |
ggacg |
39432117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 39416924 - 39417070
Alignment:
| Q |
162 |
tgtctcgaatgtcaaacacatgatgactcgttgatgtatcacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgtt |
261 |
Q |
| |
|
||||||| || || |||||| |||| ||||||||||| ||||||| ||||||| | ||| |||| ||||||| |||| || | ||| || | | |||| |
|
|
| T |
39416924 |
tgtctcgtatttcgaacacacgatggctcgttgatgtctcacgagctgaatccaaattatcattaccagaagagagaaacatgctcatgtcctcagtgtt |
39417023 |
T |
|
| Q |
262 |
aataggacaaaatggagtaggagttgaacttggaatagagccatcattca |
311 |
Q |
| |
|
||||||||||| ||| |||||||| | |||| || ||||||||||||| |
|
|
| T |
39417024 |
aataggacaaactgg---aggagttgtaattggtatcgagccatcattca |
39417070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 39533009 - 39533132
Alignment:
| Q |
188 |
ctcgttgatgtatcacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgttaataggacaaaatggagtaggagttg |
287 |
Q |
| |
|
||||||||||| ||| ||| ||||||| | ||| |||| ||||||| |||| || | ||| ||| | | ||||||||||||||||||| |||||||| |
|
|
| T |
39533009 |
ctcgttgatgtctcatgagctgaatccaaattatcattaccagaagagagaaacatgctcatatcctcagtgttaataggacaaaatgg---aggagttg |
39533105 |
T |
|
| Q |
288 |
aacttggaatagagccatcattcacat |
314 |
Q |
| |
|
| |||| || ||||||| |||||||| |
|
|
| T |
39533106 |
taattggtatcgagccataattcacat |
39533132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 14729704 - 14729376
Alignment:
| Q |
1 |
gctcatatcctcagtgttaataggacaaaatggaggagttgtaattggtatcgagccataattcacatgaaatctattcatatcaacacctgcatgagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
14729704 |
gctcatatcctcagtgttaataggacaaaatggaggagttgtaattggtaccgagacatcattcacatgaaatctatttgtatcaacacttgcacgagga |
14729605 |
T |
|
| Q |
101 |
ttgaagtcattacggttaataggacaaaatggaggaggagttgatctattcctagcttcgttgtctcgaatgtcaaacacatgatgactcgttgatgtat |
200 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||| | |||||||||||| | |||||| ||||||| |||||||||| |
|
|
| T |
14729604 |
ttgaagtcattgttgttagtaggacaaaatggaggaggaattgatatattcctagctccattgtctcgaatgccgaacacacgatgacttgttgatgtat |
14729505 |
T |
|
| Q |
201 |
cacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgttaataggacaaaatggagtaggagttgaacttggaataga |
300 |
Q |
| |
|
|| ||||||||| ||| ||||||||| |||||||||||| || ||||||||||||| ||||||| ||||||||||||| | || || |||||||||||| |
|
|
| T |
14729504 |
catgagttgaattccaattagcattgccagaagaaagaaacatgttcaaatcattattgttaatgggacaaaatggaggacgatatgcacttggaataga |
14729405 |
T |
|
| Q |
301 |
gccatcattcacattgtgaaatctattcg |
329 |
Q |
| |
|
||||||||||||| | ||||||||||||| |
|
|
| T |
14729404 |
gccatcattcacactatgaaatctattcg |
14729376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 345
Target Start/End: Original strand, 9514364 - 9514568
Alignment:
| Q |
141 |
ttgatctattcctagcttcgttgtctcgaatgtcaaacacatgatgactcgttgatgtatcacgagttgaatcccagttagcattgtcagaagaaagaag |
240 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
9514364 |
ttgatctatttctagcttcactgtctcgaatgtggaacacacgatgactcgttgatgtatcacgagttgcatcctgattagcattgccagaagaaagaaa |
9514463 |
T |
|
| Q |
241 |
cacgttcaaatcattactgttaataggacaaaatggagtaggagttgaacttggaatagagccatcattcacattgtgaaatctattcgtatgaccagtt |
340 |
Q |
| |
|
|| ||| |||| |||| ||||||||||| ||||||||| |||||||| |||||| ||||| |||||||||| ||||||||||||| |||| |||| || |
|
|
| T |
9514464 |
catgtttaaattattattgttaataggataaaatggaggaggagttgcacttggtatagaaccatcattcaagctgtgaaatctatttgtattaccactt |
9514563 |
T |
|
| Q |
341 |
ggacg |
345 |
Q |
| |
|
||||| |
|
|
| T |
9514564 |
ggacg |
9514568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 278
Target Start/End: Complemental strand, 14729786 - 14729670
Alignment:
| Q |
162 |
tgtctcgaatgtcaaacacatgatgactcgttgatgtatcacgagttgaatcccagttagcattgtcagaagaaagaagcacgttcaaatcattactgtt |
261 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||| |||||||| | ||| |||| ||||||| | || || | ||| ||| | | |||| |
|
|
| T |
14729786 |
tgtctcgaatgtcaaacacacgatggctcgttgatgtcgcacgaattgaatccaaattatcattaccagaagagataaacatgctcatatcctcagtgtt |
14729687 |
T |
|
| Q |
262 |
aataggacaaaatggag |
278 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14729686 |
aataggacaaaatggag |
14729670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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