View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12650_low_9 (Length: 285)
Name: NF12650_low_9
Description: NF12650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12650_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 30506429 - 30506182
Alignment:
| Q |
19 |
tctcttacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatat---tgtaatgctggctcag |
115 |
Q |
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| T |
30506429 |
tctcttacttgccaaccattttccctcctaactagagtatataggttattaacttattttgattatttttgcaatatatatatatgtaatgctgcctcag |
30506330 |
T |
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| Q |
116 |
tattaatatataatttgttcgtatccttttcaattcggggcctcttaataattatatatccttcgatttaatcctctatatagcttgtccaccacttgaa |
215 |
Q |
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| T |
30506329 |
tattaatatatactttgttcataaccttttcaattcttggcctcttaataattatatatcc----------tcctc--tatagcttgtccaccacttgaa |
30506242 |
T |
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| Q |
216 |
tcaaggattgaaaggagcaccttgaaaatgtgaaattacttgagcattgctagacctatg |
275 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506241 |
tcaagggttaaaaggagcaccttgaaaatgtgaaattacttgagcattgctagacctatg |
30506182 |
T |
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