View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_1 (Length: 691)
Name: NF12651_low_1
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 14 - 673
Target Start/End: Complemental strand, 45792676 - 45792017
Alignment:
| Q |
14 |
gcagagacaaacaaaacaattagcacagggataagtgatgaaagtttcaggccttgattagtgggatctttcagttttgttccggcgctacacaggccac |
113 |
Q |
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| T |
45792676 |
gcagagacaaacaaaacaattagcacagggataagtgatgaaagtttcaggccttgattagtgggatctttcagttttgttccggcgctacacaggccac |
45792577 |
T |
|
| Q |
114 |
attatgtatgaacattatttttagtagttatatttgtatggtcaaacccaaaaacagtttgatgtgttggggcgcgggttcaaatccgcaattctccact |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792576 |
attatgtatgaacattatttttagtagttatatttgtatggtcaaacccaaaaacagtttgatgtgttggggcgcgggttcaaatccgcaattctccact |
45792477 |
T |
|
| Q |
214 |
tcttcacccttaatgtgtgggactctcgccactaggctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
313 |
Q |
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| T |
45792476 |
tcttcacacttaatgtgtgggactctcgccactaggctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
45792377 |
T |
|
| Q |
314 |
ttttgatagatcaactaataaactatctccacatattagagatagagggtgacataatatggcatttttattcatattctgagaatcatttaggctaatc |
413 |
Q |
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| T |
45792376 |
ttttgattgatcaactaataaactatctccacatattagagatagagggtgacataatatggcatttttgttcatattctgagaatcatttaggctaatc |
45792277 |
T |
|
| Q |
414 |
tggttcatgaaaacaaaattatttcaagaaaggtaccaaatgctctttgatctgattctcgtgcatgttcaaatgccttctctcctttagcccttgaata |
513 |
Q |
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| T |
45792276 |
tggttcatgaaaacaaaattatttcaagaaaggtaccaaatgctctttgatctgattctcatgcatgttcaaatgccttctctcctttagcccttgaata |
45792177 |
T |
|
| Q |
514 |
aaagatttcaagctcaattatttgcttaaagcaacaattgtctatgatgtttaggtaaactttcaaaatgttaaaactaatgtcaatttttagaatttgg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792176 |
aaagatttcaagctcaattatttgcttaaagcaacaattgtctatgatgtttaggtaaactttcaaaatgttaaaactaatgtcaatttttagaatttgg |
45792077 |
T |
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| Q |
614 |
gttggccataacaaaccctacaaactggtttgtaaagtgaataatgcttcaagttataaa |
673 |
Q |
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| T |
45792076 |
gttggccataacaaaccctacaaactggtttgtaaagtgaataatgcttcaagttataaa |
45792017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 43818370 - 43818433
Alignment:
| Q |
250 |
ctactcaaggagctcatggtgctgctaggtcacagagccaccaagccaaacttctgattaatca |
313 |
Q |
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| T |
43818370 |
ctactcaaggagctcatagtgttgttagatcacagagccaccaagccaaacttttgactaatca |
43818433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 35997029 - 35997087
Alignment:
| Q |
189 |
gggttcaaatccgcaattctccacttcttcacccttaatgtgtgggactctcgccacta |
247 |
Q |
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| T |
35997029 |
gggttcaaattccgaattctccacttcttcacacataatgtgtgtgactctagccacta |
35997087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 43818457 - 43818502
Alignment:
| Q |
304 |
tgattaatcattttgatagatcaactaataaactatctccacatat |
349 |
Q |
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| T |
43818457 |
tgattaatcagtttgataaatcaactaataaaccatctccatatat |
43818502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 7339559 - 7339611
Alignment:
| Q |
202 |
caattctccacttcttcacccttaatgtgtgggactctcgccactaggctact |
254 |
Q |
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| T |
7339559 |
caattcttcacttcttcacacataatgtgtgtgaatctagccactaggctact |
7339611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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