View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12651_low_13 (Length: 285)

Name: NF12651_low_13
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12651_low_13
NF12651_low_13
[»] chr8 (10 HSPs)
chr8 (22-271)||(548712-548961)
chr8 (95-271)||(23423716-23423892)
chr8 (95-271)||(894464-894640)
chr8 (95-239)||(906003-906147)
chr8 (15-71)||(23423660-23423716)
chr8 (153-239)||(1963481-1963567)
chr8 (166-216)||(566327-566377)
chr8 (159-239)||(2014862-2014942)
chr8 (159-239)||(2018245-2018325)
chr8 (159-239)||(2436899-2436979)
[»] scaffold0428 (1 HSPs)
scaffold0428 (162-239)||(1348-1425)
[»] chr6 (4 HSPs)
chr6 (158-239)||(845020-845101)
chr6 (158-239)||(870304-870385)
chr6 (162-239)||(33257230-33257307)
chr6 (96-239)||(8294448-8294591)
[»] scaffold0184 (1 HSPs)
scaffold0184 (162-238)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (162-238)||(57568-57644)
[»] chr7 (1 HSPs)
chr7 (199-239)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (159-239)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 548961 - 548712
Alignment:
Q  22 tccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccatta 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548961 tccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccatta 548862  T
Q  122 ggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548861 ggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactc 548762  T
Q  222 attgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548761 attgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 548712  T

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Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 95 - 271
Target Start/End: Original strand, 23423716 - 23423892
Alignment:
Q  95 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  195 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 23423892  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 95 - 271
Target Start/End: Complemental strand, 894640 - 894464
Alignment:
Q  95 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 194  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  195 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatg 271  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatg 894464  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  95 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 194  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  195 atagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 23423660 - 23423716
Alignment:
Q  15 ttagaggtccaaataagcactcaagttctgcttattttagtggatcttcaaaaaagg 71  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23423660 ttagagttccaaataagcactcaaattctgcttattttagtggatcttcaaaaaagg 23423716  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  153 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  166 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 216  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  159 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  159 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  159 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  162 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  158 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  158 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  162 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  96 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 195  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  196 tagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  162 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 238  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  162 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 238  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  199 ttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  159 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 239  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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