View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12651_low_15 (Length: 245)

Name: NF12651_low_15
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12651_low_15
NF12651_low_15
[»] chr1 (19 HSPs)
chr1 (1-235)||(10991595-10991829)
chr1 (19-231)||(14659621-14659833)
chr1 (19-231)||(29289452-29289664)
chr1 (19-231)||(14649831-14650042)
chr1 (19-231)||(17653819-17654031)
chr1 (19-231)||(16100301-16100513)
chr1 (42-231)||(47050940-47051129)
chr1 (19-153)||(17479261-17479395)
chr1 (155-225)||(262660-262730)
chr1 (89-153)||(17479100-17479164)
chr1 (89-153)||(14650022-14650085)
chr1 (89-153)||(14659813-14659876)
chr1 (89-153)||(16100493-16100556)
chr1 (183-235)||(17479140-17479192)
chr1 (89-153)||(17653776-17653839)
chr1 (89-153)||(47050897-47050960)
chr1 (74-169)||(34900468-34900563)
chr1 (89-153)||(29289410-29289472)
chr1 (100-153)||(10991555-10991608)
[»] scaffold0406 (2 HSPs)
scaffold0406 (19-231)||(3211-3423)
scaffold0406 (89-153)||(3403-3466)
[»] chr5 (10 HSPs)
chr5 (19-231)||(5519897-5520109)
chr5 (19-231)||(42785046-42785258)
chr5 (33-235)||(27198731-27198931)
chr5 (33-235)||(15598159-15598361)
chr5 (89-153)||(27198691-27198755)
chr5 (98-153)||(15598346-15598401)
chr5 (89-153)||(5519854-5519917)
chr5 (89-153)||(42785238-42785301)
chr5 (19-90)||(32744997-32745068)
chr5 (175-208)||(15598460-15598493)
[»] chr2 (28 HSPs)
chr2 (19-235)||(10415403-10415619)
chr2 (19-231)||(44323635-44323847)
chr2 (23-231)||(45331561-45331769)
chr2 (33-235)||(4405474-4405676)
chr2 (19-231)||(809094-809306)
chr2 (19-231)||(39155083-39155295)
chr2 (19-235)||(9311724-9311939)
chr2 (42-231)||(2587735-2587924)
chr2 (42-231)||(31713523-31713712)
chr2 (19-235)||(15001144-15001355)
chr2 (19-235)||(4696182-4696397)
chr2 (138-231)||(26894854-26894947)
chr2 (138-231)||(26900293-26900386)
chr2 (89-153)||(10415595-10415659)
chr2 (89-153)||(9311418-9311483)
chr2 (89-153)||(809051-809114)
chr2 (89-153)||(4405652-4405716)
chr2 (89-153)||(31713692-31713755)
chr2 (89-153)||(39155040-39155103)
chr2 (89-153)||(44323827-44323890)
chr2 (89-144)||(2587904-2587958)
chr2 (90-153)||(4696374-4696437)
chr2 (91-144)||(9311560-9311614)
chr2 (89-143)||(26894820-26894874)
chr2 (89-143)||(26900259-26900313)
chr2 (89-153)||(45331749-45331812)
chr2 (183-220)||(4405785-4405822)
chr2 (89-153)||(9311684-9311748)
[»] chr6 (31 HSPs)
chr6 (19-235)||(9814370-9814586)
chr6 (19-231)||(27526797-27527009)
chr6 (19-231)||(22013527-22013739)
chr6 (19-231)||(25478688-25478900)
chr6 (19-231)||(33062579-33062791)
chr6 (42-235)||(17355062-17355255)
chr6 (42-231)||(27683676-27683865)
chr6 (33-231)||(28040270-28040469)
chr6 (35-212)||(27650620-27650800)
chr6 (42-231)||(27690997-27691184)
chr6 (90-231)||(33055267-33055408)
chr6 (42-231)||(13142572-13142760)
chr6 (89-153)||(9814562-9814626)
chr6 (89-153)||(17355231-17355295)
chr6 (109-184)||(15970841-15970916)
chr6 (89-153)||(22013719-22013782)
chr6 (89-153)||(27526989-27527052)
chr6 (89-153)||(27683845-27683908)
chr6 (89-153)||(27691164-27691227)
chr6 (89-138)||(30129974-30130023)
chr6 (89-153)||(28040449-28040512)
chr6 (183-235)||(30129946-30129998)
chr6 (89-153)||(33062771-33062834)
chr6 (89-144)||(33055388-33055442)
chr6 (90-144)||(13142537-13142591)
chr6 (89-153)||(6952027-6952091)
chr6 (92-144)||(15970766-15970818)
chr6 (183-220)||(9814695-9814732)
chr6 (89-153)||(25478641-25478708)
chr6 (183-235)||(6951999-6952051)
chr6 (19-62)||(9822210-9822253)
[»] chr3 (15 HSPs)
chr3 (19-231)||(6911757-6911969)
chr3 (19-231)||(28103372-28103584)
chr3 (22-231)||(28058876-28059085)
chr3 (22-231)||(28069301-28069510)
chr3 (19-231)||(5705965-5706174)
chr3 (42-231)||(19434586-19434775)
chr3 (42-213)||(9436623-9436792)
chr3 (33-213)||(11200263-11200443)
chr3 (89-153)||(19434755-19434818)
chr3 (89-153)||(28058833-28058896)
chr3 (89-153)||(28069258-28069321)
chr3 (89-153)||(6911714-6911777)
chr3 (89-153)||(5705922-5705985)
chr3 (89-137)||(17958738-17958786)
chr3 (89-153)||(28103564-28103627)
[»] scaffold0713 (2 HSPs)
scaffold0713 (19-231)||(345-557)
scaffold0713 (89-153)||(537-600)
[»] chr8 (11 HSPs)
chr8 (19-231)||(18981977-18982189)
chr8 (22-235)||(26917709-26917922)
chr8 (19-231)||(15924494-15924706)
chr8 (19-231)||(4707075-4707287)
chr8 (23-235)||(26340897-26341110)
chr8 (89-153)||(4707032-4707095)
chr8 (89-153)||(18982169-18982232)
chr8 (93-204)||(15256967-15257077)
chr8 (89-153)||(15924686-15924749)
chr8 (89-153)||(26917669-26917733)
chr8 (89-135)||(26340875-26340921)
[»] chr7 (11 HSPs)
chr7 (19-231)||(28803117-28803329)
chr7 (40-235)||(44060449-44060644)
chr7 (19-235)||(36264809-36265025)
chr7 (19-225)||(22010792-22010996)
chr7 (89-153)||(44060409-44060473)
chr7 (53-225)||(30943803-30943971)
chr7 (89-153)||(36264612-36264676)
chr7 (92-153)||(28803312-28803372)
chr7 (184-235)||(36264652-36264703)
chr7 (93-153)||(36264770-36264829)
chr7 (107-225)||(30944887-30945004)
[»] chr4 (18 HSPs)
chr4 (19-231)||(4763920-4764132)
chr4 (19-231)||(27561582-27561794)
chr4 (19-231)||(18694593-18694802)
chr4 (19-231)||(51533220-51533429)
chr4 (19-220)||(11513193-11513395)
chr4 (19-235)||(27734142-27734356)
chr4 (19-231)||(54352272-54352474)
chr4 (19-235)||(5359025-5359244)
chr4 (89-153)||(27734102-27734166)
chr4 (89-144)||(5358994-5359049)
chr4 (89-153)||(27561539-27561602)
chr4 (93-153)||(4763877-4763936)
chr4 (89-153)||(18694550-18694613)
chr4 (92-153)||(54352229-54352289)
chr4 (89-153)||(11513138-11513202)
chr4 (89-153)||(51533409-51533472)
chr4 (183-220)||(27733996-27734033)
chr4 (89-153)||(27733941-27734005)
[»] scaffold0438 (4 HSPs)
scaffold0438 (23-235)||(8077-8290)
scaffold0438 (23-235)||(11058-11271)
scaffold0438 (89-153)||(8037-8101)
scaffold0438 (89-135)||(11036-11082)
[»] scaffold0007 (4 HSPs)
scaffold0007 (33-235)||(60054-60256)
scaffold0007 (92-153)||(60235-60296)
scaffold0007 (89-153)||(60395-60459)
scaffold0007 (183-235)||(60367-60419)
[»] scaffold0002 (3 HSPs)
scaffold0002 (55-212)||(413344-413501)
scaffold0002 (41-225)||(424713-424897)
scaffold0002 (75-180)||(407326-407431)
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-207)||(183242-183359)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10991829 - 10991595
Alignment:
Q  1 cctcacctcacaagccggttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991829 cctcacctcacaagccggttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtgg 10991730  T
Q  101 agccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991729 agccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagag 10991630  T
Q  201 aaaagagctatccgatagattgagccgcccctatg 235  Q
    |||||||||||||||||||||||||||||||||||    
T  10991629 aaaagagctatccgatagattgagccgcccctatg 10991595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 14659621 - 14659833
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  14659621 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 14659720  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14659721 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 14659820  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  14659821 atggagccgcccc 14659833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 29289664 - 29289452
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  29289664 ttgaaaattacggttacaatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 29289565  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29289564 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 29289465  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  29289464 atggagccgcccc 29289452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 14649831 - 14650042
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  14649831 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 14649930  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14649931 gccgccattaggaggagagggctatcaatgagaggtaaact-cctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 14650029  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  14650030 atggagccgcccc 14650042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 17654031 - 17653819
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| || |||| |||||||||||||||||||||    
T  17654031 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccattagatggagccgcccctatggaaag 17653932  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17653931 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 17653832  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  17653831 atggagccgcccc 17653819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 16100301 - 16100513
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | ||||||| |||| ||||| | |||||||||||||||||||||    
T  16100301 ttgaaaattacggctataatgacgacgacctaggtgcacctagtatgtgatttcaatcaggtagaattaccccgttggatggagccgcccctatggaaag 16100400  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16100401 gctgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 16100500  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  16100501 atggagccgcccc 16100513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 47051129 - 47050940
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||||| | | ||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  47051129 gacgacctaggtgcacctagtatgtgattttaattaggtagaattaccccgttagatggagccgcccctatggaaaggcctccattaggaggagagggct 47051030  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  47051029 atcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 47050940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 17479395 - 17479261
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || | || ||||||||||||| |||||||||||||||||| ||| ||||||| |||||| ||||||| |||||||||||| |||||||     
T  17479395 ttgaaaattatggttttagtgacgacgacctaggtgcacctagtatgtgatttcaattaggtatagttaccccgttagatggagccgccccaatggaaaa 17479296  T
Q  119 gccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||||||||||||||||||||| | ||||||    
T  17479295 gccaccattaggaggagagggctatcaacgagatg 17479261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 262660 - 262730
Alignment:
Q  155 aaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagc 225  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||| ||||    
T  262660 aaactccctaattgaaaatgttttatattttgttttgagtcgagagaaaagagctatctgttagatggagc 262730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17479164 - 17479100
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  17479164 tccgttagatggagccgcccctatggaaagaccaccattaggaggagagggctatcaacgagatg 17479100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 14650022 - 14650085
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  14650022 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 14650085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 14659813 - 14659876
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  14659813 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 14659876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 16100493 - 16100556
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  16100493 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 16100556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 17479192 - 17479140
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17479192 tttgttttgagtcgagagaaaagagctatccgttagatggagccgcccctatg 17479140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 17653839 - 17653776
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  17653839 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 17653776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 47050960 - 47050897
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  47050960 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 47050897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 34900468 - 34900563
Alignment:
Q  74 gttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattga 169  Q
    ||||||||| ||||||||||||| || |||| ||  |||| ||||||| ||| |||||||||| ||||||| | |||||||||||||| |||||||    
T  34900468 gttaggtagcgttactccgttagatgaagccaccgttatgaaaaggccgccaataggaggagaaggctatcaaagagatgtaaactccttaattga 34900563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 29289472 - 29289410
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||    
T  29289472 tccgttagatggagccgcccc-atggaaaggccaccatta-gaggagagggctatcaacgagatg 29289410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 10991608 - 10991555
Alignment:
Q  100 gagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||| | ||||||    
T  10991608 gagccgcccctatggaaaggccatcattaggaggagaagactatcaacgagatg 10991555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 3211 - 3423
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  3211 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 3310  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  3311 gccaccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagttatccgttag 3410  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  3411 atggagccgcccc 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 3403 - 3466
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  3403 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 3466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 5520109 - 5519897
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||  ||||||||||||||||| |||| |||||||||||||||||||||    
T  5520109 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcgattaggtagagttactccattagatggagccgcccctatggaaag 5520010  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5520009 gccaccattaggaggagagggctatcaatgagaggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 5519910  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  5519909 atggagccgcccc 5519897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 42785046 - 42785258
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  42785046 ttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatggaaag 42785145  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  42785146 gccgccattaggaggagagggctatcaatgagaggtaaactgtctaattgaaattgttttacactttgttttgagtcgagagaaaagagctatccgttag 42785245  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  42785246 atggagccgcccc 42785258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 27198931 - 27198731
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||||||||||| ||  |||||||||    
T  27198931 tataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtatagttaccccgttagatgaagccgcccctatggaaagaccgtcattaggag 27198832  T
Q  133 gagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccct 232  Q
    |||||||||||| |||||| || ||||||||| |||||||||||||||||  | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  27198831 gagagggctatcaatgagaggtgaactccctagttgaaaatgttttacac--tattttgagtcgagagaaaagagctatccgttagatggagccgcccct 27198734  T
Q  233 atg 235  Q
    |||    
T  27198733 atg 27198731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 15598159 - 15598361
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||||||||||||||| |||||||||||| ||||| |||  |||| |||||||||||||||| || ||||||||| |||||||| |  ||||||||||    
T  15598159 tataatgacgacgacctaggtgcacctagtacgtgatttcaaataggaagagttactccgttagatgtagccgccccaatggaaagactgccattaggag 15598258  T
Q  133 gagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccct 232  Q
    |||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||    
T  15598259 gagagggctatcaatgagaggtaaactccctgattaaaaatgttttacactttgtttttagtcgagagaaaagagctatctgttggatggagccgcccct 15598358  T
Q  233 atg 235  Q
    |||    
T  15598359 atg 15598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 27198755 - 27198691
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  27198755 tccgttagatggagccgcccctatggaaagggcaccattaggaggagagggctatcaacgagatg 27198691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 15598346 - 15598401
Alignment:
Q  98 tggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  15598346 tggagccgcccctatggaaaggccaccattaggaggagagggctatcaacgagatg 15598401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 5519917 - 5519854
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  5519917 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 5519854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 42785238 - 42785301
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||    
T  42785238 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagaggactatcaacgagatg 42785301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 32745068 - 32744997
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactc 90  Q
    ||||||||| ||| ||||||||| || |||||  ||||||| ||||||||| || |||||||||||||||||    
T  32745068 ttgaaaatttcggttataatgacaacaacctagatgcaccttgtatgtgatttcggttaggtagagttactc 32744997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 15598460 - 15598493
Alignment:
Q  175 ttttacactttgttttgagtcgagagaaaagagc 208  Q
    |||||||||||||||||||||||| |||||||||    
T  15598460 ttttacactttgttttgagtcgagggaaaagagc 15598493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 10415403 - 10415619
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  10415403 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttactccgttagatggagccacccctatggaaag 10415502  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  10415503 gccgccattaggaggagagggctatcaatgagaggtaaactacctaattgaagatgttttacactttgttttgagtcgagagaaaagagctatccgttag 10415602  T
Q  219 attgagccgcccctatg 235  Q
    || ||||||||||||||    
T  10415603 atggagccgcccctatg 10415619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 44323635 - 44323847
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  44323635 ttgaaaattactgttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatggaaag 44323734  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44323735 gccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 44323834  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  44323835 atggagccgcccc 44323847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 45331561 - 45331769
Alignment:
Q  23 aaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcca 122  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| ||||||||||||||||||||||||     
T  45331561 aaattacggttataaagacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaaggcct 45331660  T
Q  123 ccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattg 222  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  45331661 ccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatgg 45331760  T
Q  223 agccgcccc 231  Q
    || ||||||    
T  45331761 agtcgcccc 45331769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 4405474 - 4405676
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  4405474 tataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccgttagatggagccgcccctatggaaaggccgccattaggag 4405573  T
Q  133 gagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccct 232  Q
    |||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||    
T  4405574 gagagggctatcaatgagaggtaaactgcttaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttaaatggagccgcccct 4405673  T
Q  233 atg 235  Q
    |||    
T  4405674 atg 4405676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 809306 - 809094
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  809306 ttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatggaaag 809207  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||  |||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||    
T  809206 gctgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaattgttttacaccttgttttgagtcgagagaaaagagctatccgttag 809107  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  809106 atggagccgcccc 809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 39155295 - 39155083
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| ||||||| || ||||||| |||||||||||||||| | ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  39155295 ttgaaaattacggttataatggcgtcgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaag 39155196  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39155195 gccgccattaggaggagagggctatcaatgagtggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 39155096  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  39155095 atggagccgcccc 39155083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 9311939 - 9311724
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||  ||||||||||||||||| |||| |||||||||||| ||||||||    
T  9311939 ttgaaaattacggttataatgatgacgacctaggtgcacctagtatgtgatttcgattaggtagagttactccattagatggagccgccccaatggaaag 9311840  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||  ||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  9311839 gcatccattaggaggagagagctatcaacgagatgtaaactccctaattgaaaatg-tttacgctttgttttgagtcgagagaaaagagctatccgttag 9311741  T
Q  219 attgagccgcccctatg 235  Q
    || ||||||||||||||    
T  9311740 atggagccgcccctatg 9311724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 2587735 - 2587924
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| |||| | ||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  2587735 gacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccctgttagatggagccgcccctatggaaaggccgccattagaaggagagggct 2587834  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2587835 atcaatgcgaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 2587924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31713523 - 31713712
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||| | ||| |||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  31713523 gacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggct 31713622  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  31713623 atcaatgagtggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 31713712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 15001355 - 15001144
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||        | |||||||||||||||||||||| |||||||||||||||||||||    
T  15001355 ttgaaaattacggttataatgacgacgacctaggtgcacctagcat--------aattaggtagagttactccgttagatggagccgcccctatggaaag 15001264  T
Q  119 gccaccattaggaggag---agggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccga 215  Q
    ||| |||||||||||||   || |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15001263 gccgccattaggaggaggagagcgctatcaatgagaggtaaactccccaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgt 15001164  T
Q  216 tagattgagccgcccctatg 235  Q
    ||||| |||| |||| ||||    
T  15001163 tagatggagctgcccttatg 15001144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 4696182 - 4696397
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || ||||||| ||||| | || |||||||||||||||||  ||| ||||||| |||||| ||||||| |||||||||||||||||||||    
T  4696182 ttgaaaattatggttataatggcgacggcttaggtgcacctagtatgtgaattcaattaggtatagttaccccgttagatggagccgcccctatggaaag 4696281  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||  ||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||| |||    
T  4696282 gccgtcattaggaggagagggctatcaataagaggtaaactccctaatttaaaatgttttacac-ttgttttgagtcgagagaaaagatctacccgttag 4696380  T
Q  219 attgagccgcccctatg 235  Q
    || ||||||||| ||||    
T  4696381 atggagccgcccatatg 4696397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 26894947 - 26894854
Alignment:
Q  138 ggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||    
T  26894947 ggctatcaatgagaggtaaactccctaattgaaaatgttttacactttattttgagtcgagagaaaagagctatccgttatatggagccgcccc 26894854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 26900386 - 26900293
Alignment:
Q  138 ggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||||||    
T  26900386 ggctatcaatgagaggtaaactccctaattgaaaatgttttacactttattttgagtcgagagaaaagagctatccgttatatggagccgcccc 26900293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 10415595 - 10415659
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  10415595 tccgttagatggagccgcccctatggaaaggccaccattaggagaagagggctatcaacgagatg 10415659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 9311483 - 9311418
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaa-ggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||    
T  9311483 tccgttagatggagccgcccctatggaaaaggccaccattaggaggagagggctatcaacgagatg 9311418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 809114 - 809051
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  809114 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 809051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 4405652 - 4405716
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  4405652 tccgttaaatggagccgcccctatgggaaggccaccattaggaggagagggctatcaacgagatg 4405716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 31713692 - 31713755
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  31713692 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 31713755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 39155103 - 39155040
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  39155103 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 39155040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 44323827 - 44323890
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  44323827 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 44323890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 2587904 - 2587958
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatc 144  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  2587904 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatc 2587958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 4696374 - 4696437
Alignment:
Q  90 ccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||| | ||||||    
T  4696374 ccgttagatggagccgcccatatggaaaggacaccattaggaggatagggctatcaacgagatg 4696437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 9311614 - 9311560
Alignment:
Q  91 cgttaggtggagccgcccctatggaaa-ggccaccattaggaggagagggctatc 144  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  9311614 cgttagatggagccgcccctatggaaaaggccaccattaggaggaaagggctatc 9311560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 26894874 - 26894820
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctat 143  Q
    |||||||  ||||||||||||  ||||||||||||||||||||||||||||||||    
T  26894874 tccgttatatggagccgccccattggaaaggccaccattaggaggagagggctat 26894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 26900313 - 26900259
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctat 143  Q
    |||||||  ||||||||||||  ||||||||||||||||||||||||||||||||    
T  26900313 tccgttatatggagccgccccattggaaaggccaccattaggaggagagggctat 26900259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 45331749 - 45331812
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||| | ||||||    
T  45331749 tccgttagatggagtcgcccc-atggaaatgccaccattaggaggagagggctatcaacgagatg 45331812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 4405785 - 4405822
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagat 220  Q
    |||||||||||||||||||||||||||||||| |||||    
T  4405785 tttgttttgagtcgagagaaaagagctatccgttagat 4405822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 9311748 - 9311684
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaag-gccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||||||| |||  ||||||||||| |||||||||||||| | ||||||    
T  9311748 tccgttagatggagccgcccctatgaaaaatgccaccattag-aggagagggctatcaacgagatg 9311684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 9814370 - 9814586
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| || |||||||||| |||| || |||| |||||||||||||||||||||    
T  9814370 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagaattaccccattagatggagccgcccctatggaaag 9814469  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9814470 gccaccattaggaggagagggctatcaatgagaggtaaacttcctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 9814569  T
Q  219 attgagccgcccctatg 235  Q
    || ||||||||||||||    
T  9814570 atggagccgcccctatg 9814586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 27526797 - 27527009
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  27526797 ttgaaaattacggttataatgacgacgacctagatgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 27526896  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27526897 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 27526996  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  27526997 atggagccgcccc 27527009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 22013527 - 22013739
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  22013527 ttgaaaattactgttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatggaaag 22013626  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22013627 gccgccattaggaggagagggctatcaatgagaggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 22013726  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  22013727 atggagccgcccc 22013739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25478900 - 25478688
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  25478900 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagatttaccccgttagatggagccgcccctatggaaag 25478801  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||  ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25478800 gccttcattaggaggagatggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 25478701  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  25478700 atggagccgcccc 25478688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 33062579 - 33062791
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || ||||||||||||||||||  ||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  33062579 ttgaaaattatggttataatgacgacgacctagttgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 33062678  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||  ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33062679 gccgtcattaggaggagaaggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 33062778  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  33062779 atggagccgcccc 33062791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 17355062 - 17355255
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||| | ||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  17355062 gacgacctaggtgcacctagtatgtgttttcaattaggcagagttactccgttagatggagccgccccaatggaaaggccaccattaggaggagagggct 17355161  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    ||| |||||| ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  17355162 atcaatgagaggttcactccctaattgaaaatgttttatactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccctatg 17355255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 27683676 - 27683865
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||| | ||| |||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27683676 gacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggct 27683775  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27683776 atcaatgagtggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 27683865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 28040270 - 28040469
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||||||||||| ||| |||||||||||||||||| ||| ||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||||||||    
T  28040270 tataatgacgacgatctaggtgcacctagtatgtgatttcaattaggtagaattaccccgatagatggagccgcccctatggaaaggccgccattaggag 28040369  T
Q  133 gagagggc-tatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    | |||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  28040370 gggagggcatatcaatgagaggtaaacttcctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 28040469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 27650620 - 27650800
Alignment:
Q  35 taatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcca---ccattagga 131  Q
    |||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||  ||||||||||||||||||||||||   |||||||||    
T  27650620 taatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagagttactccattagacggagccgcccctatggaaaggccagtaccattagga 27650719  T
Q  132 ggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatc 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  27650720 ggagagggctatcaatgagatgtaaactccctaattgaaaatgttttacaatttattttgagtcgggagaaaagagctatc 27650800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 27690997 - 27691184
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||| | ||| |||||||||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  27690997 gacgacctaggtgcacctagtatgtgttttcaattaggtagagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggct 27691096  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27691097 atcaatgagtggtaaact--ctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 27691184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 33055267 - 33055408
Alignment:
Q  90 ccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttt 189  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  33055267 ccgttagatggagccgcccctatggaagggccgccattaggaggaaagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttt 33055366  T
Q  190 tgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  33055367 tgagtcgagagaaaagagctatccgttagatggagccgcccc 33055408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 231
Target Start/End: Complemental strand, 13142760 - 13142572
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||||  |||  |||| | |||||| || |||| |||||||||||||||||||||||| |||||||||||||| | ||    
T  13142760 gacgacctaggtgcacctagtatgtgaattcaagtagggatagttaccccattagatggagccgcccctatggaaaggccgccattaggaggagacgact 13142661  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  13142660 atcaatgagaggtaaactccataattgaaaatgttttacac-ttgttttgagtcgagagaaaagagctacccgttagatggagccgcccc 13142572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 9814562 - 9814626
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  9814562 tccgttagatggagccgcccctatggaaaggccaccattaggaggagagggctatcaacgagatg 9814626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 17355231 - 17355295
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  17355231 tccgttagatggagccgcccctatggaaaggccaccattaggaggagcgggctatcaacgagatg 17355295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 15970916 - 15970841
Alignment:
Q  109 ctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactt 184  Q
    |||||||||||||  ||||| |||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||    
T  15970916 ctatggaaaggccgtcattaagaggagagagctatcaatgagaggtaaactccctaattgaaaatattttacactt 15970841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 22013719 - 22013782
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  22013719 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 22013782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 27526989 - 27527052
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27526989 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 27527052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 27683845 - 27683908
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27683845 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 27683908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 27691164 - 27691227
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27691164 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 27691227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 30129974 - 30130023
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagg 138  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  30129974 tccgttagatggagccacccctatggaaaggccaccattaggaggagagg 30130023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 28040449 - 28040512
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||    
T  28040449 tccgttagatggagccgcccc-atggaaaggccaccattaggaggaaagggctatcaacgagatg 28040512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 30129946 - 30129998
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  30129946 tttgttttgagtcgagagaaaagagctatccgttagatggagccacccctatg 30129998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 33062771 - 33062834
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||    
T  33062771 tccgttagatggagccgcccc-atggaaaggccaccattgggaggagagggctatcaacgagatg 33062834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 33055388 - 33055442
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatc 144  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  33055388 tccgttagatggagccgcccc-atggaaaggccaccattgggaggagagggctatc 33055442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 13142591 - 13142537
Alignment:
Q  90 ccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatc 144  Q
    ||||||| ||||||||||||  ||||||| |||||||||||||||||||||||||    
T  13142591 ccgttagatggagccgccccattggaaagaccaccattaggaggagagggctatc 13142537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 6952027 - 6952091
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||| | ||||||    
T  6952027 tccgttagctggagtcgcctctatggaaaggccatcattatgaggagagggctatcaacgagatg 6952091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 15970818 - 15970766
Alignment:
Q  92 gttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatc 144  Q
    ||||| |||||||  |||||||||||| |||||||||||||||||||||||||    
T  15970818 gttagatggagccagccctatggaaagaccaccattaggaggagagggctatc 15970766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 9814695 - 9814732
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagat 220  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9814695 tttgttttgagtcgagagaaaagagctatccgttagat 9814732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 25478708 - 25478641
Alignment:
Q  89 tccgttaggtggagccgcccc---tatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||||   || |||||||||||||||||| ||||||||||||| | ||||||    
T  25478708 tccgttagatggagccgccccatgtacggaaaggccaccattaggtggagagggctatcaacgagatg 25478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 6951999 - 6952051
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    |||||||||||||||||||||||||||||||| ||| | ||| |||| |||||    
T  6951999 tttgttttgagtcgagagaaaagagctatccgttagctggagtcgcctctatg 6952051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 9822210 - 9822253
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagt 62  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  9822210 ttgaaaattatggttataatgacgacgacctaggtgcacctagt 9822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 6911969 - 6911757
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  6911969 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 6911870  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6911869 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 6911770  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  6911769 atggagccgcccc 6911757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 28103372 - 28103584
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  28103372 ttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 28103471  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28103472 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 28103571  T
Q  219 attgagccgcccc 231  Q
    || ||| ||||||    
T  28103572 atggagtcgcccc 28103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 28059085 - 28058876
Alignment:
Q  22 aaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcc 121  Q
    |||||||||| |||||||||||||||||| | ||||||||||| |||| ||| |||||||||||||| || |||| ||||||||||||||||||||||||    
T  28059085 aaaattacggttataatgacgacgacctaggagcacctagtatctgatttcaattaggtagagttaccccattagatggagccgcccctatggaaaggcc 28058986  T
Q  122 accattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
     |||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||     
T  28058985 gccattaggaggagagggctatcaatgagaggtaaactctctaattgaaattgttttacactttgttttgagtcgagagaaaagagctatccgttagatg 28058886  T
Q  222 gagccgcccc 231  Q
    ||||||||||    
T  28058885 gagccgcccc 28058876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 28069510 - 28069301
Alignment:
Q  22 aaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcc 121  Q
    |||||||||| |||||||||||||||||| | ||||||||||| |||| ||| |||||||||||||| || |||| ||||||||||||||||||||||||    
T  28069510 aaaattacggttataatgacgacgacctaggagcacctagtatctgatttcaattaggtagagttaccccattagatggagccgcccctatggaaaggcc 28069411  T
Q  122 accattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
     |||||||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||     
T  28069410 gccattaggaggagagggctatcaatgagaggtaaactctctaattgaaattgttttacactttgttttgagtcgagagaaaagagctatccgttagatg 28069311  T
Q  222 gagccgcccc 231  Q
    ||||||||||    
T  28069310 gagccgcccc 28069301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 5706174 - 5705965
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||  ||  ||||||||  ||||||| |||| |||||||||||| ||||||||    
T  5706174 ttgaaaattacgattataatgacgacgacctaggtgcacctagtatgtgacttcgattaggtag--ttactccattagatggagccgccccaatggaaag 5706077  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  5706076 gccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatg-tttacactttgttttgagtcgagagaaaagagctatccgttag 5705978  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  5705977 atggagccgcccc 5705965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 19434586 - 19434775
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||| ||| |||||||||||||||||| ||| ||||||||| |||| || |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19434586 gacgatctaggtgcacctagtatgtgatttcaattaggtagaattaccccattagatggagccgcccctatggaaaggccgccattaggaggagagggct 19434685  T
Q  142 atcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19434686 atcaatgagaggtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttagatggagccgcccc 19434775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 9436792 - 9436623
Alignment:
Q  42 gacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggct 141  Q
    ||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |||||  |||||||||| ||||| |||||| |||||||||||||    
T  9436792 gacgacctaggtgcacctagtatgtgatttcggttaggtagagttactccgttagatggagttgcccctatgggaaggctaccattgggaggagagggct 9436693  T
Q  142 atc-gatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatcc 213  Q
    |||  |||||||||||||||||| ||||||||||||||||  ||||  ||||||||||||||||||| |||||    
T  9436692 atcaaatgagatgtaaactccct-attgaaaatgttttacgttttg--ttgagtcgagagaaaagagttatcc 9436623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 11200263 - 11200443
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||| | |||| || |   ||||||||||||||| ||||||||||||    
T  11200263 tataataacgacgaactaggtgcacctagtatgtgatttcagttaggtagagttactgcattagatgaaaatgcccctatggaaaggtcaccattaggag 11200362  T
Q  133 gagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatcc 213  Q
    |||||||| ||| ||||||| | || | ||||| |||||||  |||||  |||||||||||||||||||||||||||||||    
T  11200363 gagagggccatcaatgagattttaattgcctaactgaaaattatttacgttttgttttgagtcgagagaaaagagctatcc 11200443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 19434755 - 19434818
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  19434755 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 19434818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28058896 - 28058833
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  28058896 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 28058833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28069321 - 28069258
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  28069321 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 28069258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 6911777 - 6911714
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||    
T  6911777 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagatggctatcaacgagatg 6911714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 5705985 - 5705922
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| || | ||||||||||||||||||||||||||||| | ||||||    
T  5705985 tccgttagatggagccgcccc-ataggaaggccaccattaggaggagagggctatcaacgagatg 5705922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 17958786 - 17958738
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagag 137  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  17958786 tccgttagatggagtcgctcctatggaaaggccaccattaggaggagag 17958738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 28103564 - 28103627
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||| | ||||||    
T  28103564 tccgttagatggagtcgcccc-atggaaatgccaccattaggaggagagggctatcaacgagatg 28103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 345 - 557
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| || ||||||||||||||| ||| ||||| ||| |||| || |||| |||||||||||||||||||||    
T  345 ttgaaaattatggttataatgacgacgacctaggtacacctagtatgtgatttcaattaggcagaattaccccattagatggagccgcccctatggaaag 444  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  445 gccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 544  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  545 atggagccgcccc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 537 - 600
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  537 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaatgagatg 600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 18981977 - 18982189
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  18981977 ttgaagattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 18982076  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  18982077 gccgccattaggaggagagggctatcaatgagaggtaagctccctaattgaaaatgctttacactttgttttgagtcgagagaaaagagctatccgttag 18982176  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  18982177 atggagccgcccc 18982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 26917922 - 26917709
Alignment:
Q  22 aaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcc 121  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||| | |||||||||||| |||||||||||    
T  26917922 aaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccgttggatggagccgccccgatggaaaggcc 26917823  T
Q  122 accattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  26917822 accattaggaggagagggctatcaatgagaggtaaacttcctaattgaaaatgttttacactttgttttgagtcgagagaaaagagatatccgttagatg 26917723  T
Q  222 gagccgcccctatg 235  Q
    ||| ||||||||||    
T  26917722 gagtcgcccctatg 26917709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 15924494 - 15924706
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| || |||||||||| |||| || |||| |||||||||| ||||||||||    
T  15924494 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcggttaggtagaattaccccattagatggagccgccactatggaaag 15924593  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||    
T  15924594 gccaccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatattttacacattgttttgagtcgagagaaaagagctatccgttag 15924693  T
Q  219 attgagccgcccc 231  Q
    || ||||| ||||    
T  15924694 atggagccacccc 15924706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4707287 - 4707075
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| |  |||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||| || |||| ||||||| |||||||||||||    
T  4707287 ttgaaaattatgattataatgacgacgacctaggtgtacctagtatgtgatttcaattaggtagagttaccccattagatggagccacccctatggaaag 4707188  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||  |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||    
T  4707187 gccgccattaggaggagagggctatcaatgagaggtaaactgtctaattgaaactattttacactttgttttgagtcgagagaaaagagctatccgttag 4707088  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  4707087 atggagccgcccc 4707075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 26341110 - 26340897
Alignment:
Q  23 aaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcca 122  Q
    |||| |||| ||||| |||||||||||  |||||||||||||||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||     
T  26341110 aaatgacggttataaggacgacgacctgtgtgcacctagtatgtgattttggttaggtagagttactccgttaaatggagccgcccctatggaaaggccg 26341011  T
Q  123 ccattaggaggagagggctatcgatgagatgtaaactccctaattgaa-aatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
    |||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||||||||||||||| |||||     
T  26341010 ccattaggaggaaagggctatcaatgagatgtaaactccctaaccgaataatgttttacactttgttttgagtttagagaaaagagctatccgttagatg 26340911  T
Q  222 gagccgcccctatg 235  Q
    ||||||||||||||    
T  26340910 gagccgcccctatg 26340897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 4707095 - 4707032
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  4707095 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 4707032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 18982169 - 18982232
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  18982169 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 18982232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 15256967 - 15257077
Alignment:
Q  93 ttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttga 192  Q
    |||| |||| || |||||| | ||||||| |||||||||||| |||| |||| |  | ||||||||||| ||||||||||||||||||| | | ||||||    
T  15256967 ttagatggatccacccctaagaaaaggccgccattaggaggaaagggatatcaacaaaatgtaaactcc-taattgaaaatgttttacattgtattttga 15257065  T
Q  193 gtcgagagaaaa 204  Q
    ||||||||||||    
T  15257066 gtcgagagaaaa 15257077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 15924686 - 15924749
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||    
T  15924686 tccgttagatggagccacccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 15924749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 26917733 - 26917669
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| | ||||||    
T  26917733 tccgttagatggagtcgcccctatggaaaggccaccattaggaagagagtgctatcaacgagatg 26917669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 26340921 - 26340875
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggag 135  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  26340921 tccgttagatggagccgcccctatggaaaggccaccatttggaggag 26340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 28803117 - 28803329
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||     
T  28803117 ttgaaaattacggttataatggcgacgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccgttagatggagccgcccctatggaaaa 28803216  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||    
T  28803217 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacacctttttttgagtcgagagaaaagagctatctgttag 28803316  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  28803317 atggagccgcccc 28803329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 44060644 - 44060449
Alignment:
Q  40 acgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagaggg 139  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||| |||| || |||| |||||||||||||||||||||||| |||||||||||||||||    
T  44060644 acgacgacctaggtgcacctagtatgtgatttcaattaggtagacttaccccattagatggagccgcccctatggaaaggccgccattaggaggagaggg 44060545  T
Q  140 ctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    ||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  44060544 ctatcaatgagaggtaaactccctaattgaaaatgttttagattttgttttgagtcgagagaaaagagctatccgttagatggagccgcccctatg 44060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 36265025 - 36264809
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||||   |||||||||||||||||| || ||||||||||||||| ||| |||||||||||||| ||||||| | |||||||||||||||||||    
T  36265025 ttgaaaattacaattataatgacgacgacctaggttcacctagtatgtgatttcaattaggtagagttaccccgttagatagagccgcccctatggaaag 36264926  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| ||||||||||||||| |||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||  |||    
T  36264925 gccgccattaggaggagagtgctatcaatgagaggtaaactttctaattgaaaatgttttacactttgttttgagtcgagagaaaagagttatccattag 36264826  T
Q  219 attgagccgcccctatg 235  Q
    || ||||||||||||||    
T  36264825 atggagccgcccctatg 36264809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 22010792 - 22010996
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||| | |||||||| ||||||||| |||||||||||||||||| ||  ||||| ||||||||||  |||| |||||||||||||||||||||    
T  22010792 ttgaaaattacagttataatgatgacgacctaggtgcacctagtatgtgatttcgattagg-agagttactca-ttagatggagccgcccctatggaaag 22010889  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||||||| | |||||||||| ||||   ||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||| |||    
T  22010890 gccaccagttggaggagaggcctattagtgagatgtaaactccctaattgaaaatgtgttacgttttgtttagagtcgagagaaaagagctatccgttag 22010989  T
Q  219 attgagc 225  Q
    || ||||    
T  22010990 atggagc 22010996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 44060473 - 44060409
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  44060473 tccgttagatggagccgcccctatggaaaggccaccattaggaggagagggctatcaacgagatg 44060409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 30943803 - 30943971
Alignment:
Q  53 tgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagat 152  Q
    |||| ||||||||||||  || |||| ||||||||| ||||||  || |||||||| ||||||||| || |||||| ||||||| || |||| |  |||     
T  30943803 tgcatctagtatgtgatcacaattagatagagttac-ccgttaaatgaagccgccc-tatggaaagaccgccattaagaggagatggttatcaacaagac 30943900  T
Q  153 gtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagc 225  Q
     |||||| |||  |||| ||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||    
T  30943901 ttaaacttcct--ttgagaatgttttacgttttgttttgagtcgagagaaaagagctatccgttagatggagc 30943971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 36264676 - 36264612
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||    
T  36264676 tccgttagatggagccgctcctatggaaaggtcaccattaggaggagagggctatcaacgagatg 36264612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 28803312 - 28803372
Alignment:
Q  92 gttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  28803312 gttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 28803372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 36264703 - 36264652
Alignment:
Q  184 ttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  36264703 ttgttttgagtcgagagaaaagagctatccgttagatggagccgctcctatg 36264652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 36264829 - 36264770
Alignment:
Q  93 ttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||| | ||||||    
T  36264829 ttagatggagccgcccctatggaa-ggtcaccattaggaggagagggctatcaacgagatg 36264770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 30944887 - 30945004
Alignment:
Q  107 ccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttac-actttgttttgagtcgagagaaaag 205  Q
    |||||||||||| || |||||| ||||||| ||||||| |  |||  |||||| |||  |||| ||||||||||   ||| |||| ||||||||||||||    
T  30944887 ccctatggaaagaccgccattaagaggagatggctatcaacaagacttaaacttcct--ttgagaatgttttacgtttttttttttagtcgagagaaaag 30944984  T
Q  206 agctatccgatagattgagc 225  Q
    ||||||| | ||||| ||||    
T  30944985 agctatctgttagatggagc 30945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 4764132 - 4763920
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| || ||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||    
T  4764132 ttgaaaattatggttataatgacgacgacctaggtacacctagtatgtgatttcaattaggtagaattaccccgttagatggagccgcccctatggaaag 4764033  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  4764032 gccgccattaggaggagagggctatcaatgagaggtaaactccctaattaaaaatgttttacactttgttttgagtcgagagaaaagagctatccattag 4763933  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  4763932 atggagccgcccc 4763920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 27561794 - 27561582
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||  | ||||||| |||||||||||||||||| ||| |||||||||||||| || |||| |||||||||||||||||||||    
T  27561794 ttgaaaattacggttataatggtgtcgacctaggtgcacctagtatgtgatttcaattaggtagagttaccccattagatggagccgcccctatggaaag 27561695  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| ||||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27561694 gccgccattaggaggagggggctatcaatgagaggtaaactctctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgttag 27561595  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  27561594 atggagccgcccc 27561582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 18694802 - 18694593
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||| ||  ||||||||  ||||||| |||| ||||||| |||| ||||||||    
T  18694802 ttgaaaattatggttataatgacgacgacctaggtgcacctagtatgtgatttcgattaggtag--ttactccattagatggagccaccccaatggaaag 18694705  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  18694704 gccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatg-tttacactttgttttgagtcgagagaaaagagctatccgttag 18694606  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  18694605 atggagccgcccc 18694593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 51533220 - 51533429
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||  ||||||||  ||||||| |||| |||||||||||| ||||||||    
T  51533220 ttgaaaattacggttataataacgacgacctaggtgcacctagtatgtgatttcgattaggtag--ttactccattagatggagccgccccaatggaaag 51533317  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||     
T  51533318 gccgccattaggaggagagggctatcaatgagatgtaaactccctaattgaaaatg-tttacactttgttttgagtcgagagaaaagagctatccgttat 51533416  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  51533417 atggagccgcccc 51533429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 11513395 - 11513193
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||| |||||||| ||||||||||||    
T  11513395 ttgaaaattacggttataatgacgacgacctaggtgcacctagtatgtgatttcaattaggtagagttattccgttagatggagccgaccctatggaaag 11513296  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttg-ttttgagtcgagagaaaagagctatccgata 217  Q
    ||  | ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||    
T  11513295 gctgctattagaaggagagggctatcaatgagaggtaaactccctaattgaaaatgttttacactttgtttttgtgtcgagagtaaagagctatccgtta 11513196  T
Q  218 gat 220  Q
    |||    
T  11513195 gat 11513193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 27734356 - 27734142
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    |||||||||| || |||||||| ||||||| | ||||| |||||||||||| ||| |||| |||  |||||||||||| |||||||||||||||||||||    
T  27734356 ttgaaaattatggttataatgatgacgacccaggtgcatctagtatgtgatttcaattagatag--ttactccgttagatggagccgcccctatggaaag 27734259  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    |   |||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  27734258 gttgccattaggaggagagggctatcaatgagaggtaaactaccgaattgaaaatgttttacactttgttttgagtcgagagaaaatagctatccgttag 27734159  T
Q  219 attgagccgcccctatg 235  Q
    || |||| |||||||||    
T  27734158 atggagctgcccctatg 27734142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 54352474 - 54352272
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaag 118  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||||| ||  ||||||||||||||||| |||| || ||| ||||| ||||||||    
T  54352474 ttgaaaattacggttataatgacaacgacctaggtgcacatagtatgtgatttcgattaggtagagttactccattagatgaagctgccccaatggaaag 54352375  T
Q  119 gccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatag 218  Q
    ||  |||||         |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||    
T  54352374 gctgccatt---------gggctatcaatgagatgtaaactccctaattgaaaatgttt-acactttgttttgagtcgagagaaaagagctatctgttag 54352285  T
Q  219 attgagccgcccc 231  Q
    || ||||||||||    
T  54352284 atggagccgcccc 54352272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 5359244 - 5359025
Alignment:
Q  19 ttgaaaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtag----agttactccgttaggtggagccgcccctatgg 114  Q
    ||||||||||||| ||||||||||||||| || ||||||||| |||||||| |  |||||||||    |||||||||||||| | ||| |||||||||||    
T  5359244 ttgaaaattacggttataatgacgacgacatacgtgcacctactatgtgattttggttaggtagctagagttactccgttagatagagtcgcccctatgg 5359145  T
Q  115 aaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaa-ttgaaaatgttttacactttgttttgagtcgagagaaaagagctatcc 213  Q
    |||| |  |  | ||||||||||||||||| ||||||||||||||||| ||    |||||||| |||| |||||||||||||||||||||||||  ||||    
T  5359144 aaagtctgc--tcaggaggagagggctatcaatgagatgtaaactcccaaaccaaaaaatgttgtacattttgttttgagtcgagagaaaagagtgatcc 5359047  T
Q  214 gatagattgagccgcccctatg 235  Q
    | ||||| ||||||||||||||    
T  5359046 gttagatggagccgcccctatg 5359025  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 27734166 - 27734102
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27734166 tccgttagatggagctgcccctatggaaaggccaccattaggaggagagggctatcaacgagatg 27734102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 5359049 - 5358994
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatc 144  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5359049 tccgttagatggagccgcccctatggaaaggccaccattaggaggagaggactatc 5358994  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 27561602 - 27561539
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27561602 tccgttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 27561539  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 4763936 - 4763877
Alignment:
Q  93 ttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  4763936 ttagatggagccgcccc-atggaaaggccaccattaggaggagagggctatcaacgagatg 4763877  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 18694613 - 18694550
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  18694613 tccgttagatggagccgcccc-atgggaaggccaccattaggaggagagggctatcaacgagatg 18694550  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 54352289 - 54352229
Alignment:
Q  92 gttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  54352289 gttagatggagccgcccc-atgggaaggccaccattaggaggagagggctatcaacgagatg 54352229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 11513202 - 11513138
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||  | ||||||| |||||||||||||||||||||||||||||| | ||||||    
T  11513202 tccgttagatggagttgtccctatgaaaaggccaccattaggaggagagggctatcaacgagatg 11513138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 51533409 - 51533472
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||    
T  51533409 tccgttatatggagccgcccc-atgggaaggccaccattaggaggagagggctatcaacgagatg 51533472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 27734033 - 27733996
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagat 220  Q
    |||||||||||||||||||||||||||||||| |||||    
T  27734033 tttgttttgagtcgagagaaaagagctatccgttagat 27733996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 27734005 - 27733941
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| || |||  |||||||||||| |||||||||||||||||| ||||||| | ||||||    
T  27734005 tccgttagatgaagcttcccctatggaaaagccaccattaggaggagacggctatcaacgagatg 27733941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 8290 - 8077
Alignment:
Q  23 aaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcca 122  Q
    |||| |||| ||||| |||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||  |||||||||||||||||||||||     
T  8290 aaatgacggttataaggacgacgacctaggtgcacctagtatgtgattttggttaggtagagttactccgttagacggagccgcccctatggaaaggccg 8191  T
Q  123 ccattaggaggagagggctatcgatgagatgtaaactccctaattgaa-aatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  8190 ccattaggaggagagggctatcaatgagatgtaaactccctaaccgaataatgttttacactttgttttgagtcgagagaaaagagctatccgttagatg 8091  T
Q  222 gagccgcccctatg 235  Q
    ||||||||||||||    
T  8090 gagccgcccctatg 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 11271 - 11058
Alignment:
Q  23 aaattacgggtataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggcca 122  Q
    |||| |||| ||||| |||||||||||  |||||||||||||||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||     
T  11271 aaatgacggttataaggacgacgacctgtgtgcacctagtatgtgattttggttaggtagagttactccgttaaatggagccgcccctatggaaaggccg 11172  T
Q  123 ccattaggaggagagggctatcgatgagatgtaaactccctaattgaa-aatgttttacactttgttttgagtcgagagaaaagagctatccgatagatt 221  Q
    |||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||||||||||||||| |||||     
T  11171 ccattaggaggaaagggctatcaatgagatgtaaactccctaaccgaataatgttttacactttgttttgagtttagagaaaagagctatccgttagatg 11072  T
Q  222 gagccgcccctatg 235  Q
    ||||||||||||||    
T  11071 gagccgcccctatg 11058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 8101 - 8037
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  8101 tccgttagatggagccgcccctatggaaaggccaccatttggaggagagggctatcaacgagatg 8037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 11082 - 11036
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggag 135  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||    
T  11082 tccgttagatggagccgcccctatggaaaggccaccatttggaggag 11036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 60054 - 60256
Alignment:
Q  33 tataatgacgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggag 132  Q
    |||||||||||||||||| |||||||||||||||||| ||  ||||| |||||||| || |||| ||||||||||||||||| |||||||||||||||||    
T  60054 tataatgacgacgacctaggtgcacctagtatgtgatttcgattagggagagttac-ccattagatggagccgcccctatgggaaggccaccattaggag 60152  T
Q  133 gagagggctatcgatgagatgtaaact-ccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagccgcccc 231  Q
    |||||||||||| |||||| ||||||| ||| |||||||||||||| ||| ||||||| || | ||||||||||||||||| | ||||| ||||||||||    
T  60153 gagagggctatcaatgagacgtaaactccccaaattgaaaatgtttgacagtttgtttcgaattgagagaaaagagctatctgttagatggagccgcccc 60252  T
Q  232 tatg 235  Q
    ||||    
T  60253 tatg 60256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 60235 - 60296
Alignment:
Q  92 gttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  60235 gttagatggagccgcccctatggaaaggccaccattaggaggagagggctatcaacgagatg 60296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 60395 - 60459
Alignment:
Q  89 tccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatg 153  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||    
T  60395 tccgttagatggagccgcccttatgggaaggccacctttaggaggagagggctatcaacgagatg 60459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 60367 - 60419
Alignment:
Q  183 tttgttttgagtcgagagaaaagagctatccgatagattgagccgcccctatg 235  Q
    ||||||||||||| ||||||||| |||||||| ||||| ||||||||| ||||    
T  60367 tttgttttgagtcaagagaaaagggctatccgttagatggagccgcccttatg 60419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 413501 - 413344
Alignment:
Q  55 cacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgt 154  Q
    |||||||||| |||| |  |||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |  | ||||    
T  413501 cacctagtatttgattttggttaggtagagttattccgttagatggagccgcccctatggaaagaccgccattaggaggagagggctatcaaacaaatgt 413402  T
Q  155 aaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatc 212  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  413401 aaactctctaattgaaaatgttttacaatttgttttgagtcgagagaaaagatctatc 413344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 424897 - 424713
Alignment:
Q  41 cgacgacctaagtgcacctagtatgtgatatcagttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggc 140  Q
    |||||||||| |  || ||||||| |||| || |||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||| |||||| ||    
T  424897 cgacgacctaggcacatctagtatttgatttcggttaggtagagttattccgatagatggagccgcccctatggaaaggccgccattaggtggagagagc 424798  T
Q  141 tatcgatgagatgtaaactccctaattgaaaatgttttacactttgttttgagtcgagagaaaagagctatccgatagattgagc 225  Q
    |||| |  |||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||| | ||||| ||||    
T  424797 tatcaaacagatgtaaactctctaattgaaaatgttttacaatttgttttgagtagagagaaaagagttatctgttagatggagc 424713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 407431 - 407326
Alignment:
Q  75 ttaggtagagttactccgttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaatg 174  Q
    ||||||||||||| |||  ||| || | ||||||||||||||||||| |||||||| |||||| |||||| |  |||||||||||| |||||||||||||    
T  407431 ttaggtagagttattccaatagatgaaaccgcccctatggaaaggccgccattaggtggagagagctatcaaacagatgtaaactctctaattgaaaatg 407332  T
Q  175 ttttac 180  Q
    ||||||    
T  407331 ttttac 407326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 183359 - 183242
Alignment:
Q  92 gttaggtggagccgcccctatggaaaggccaccattaggaggagagggctatcgatgagatgtaaactccctaattgaaaa-tgttttacacttt-gttt 189  Q
    |||||||| ||  |||| |||| ||||| || |||||| | ||||| |||||| ||||||||||| || ||| |||||||| | ||||||  ||| ||||    
T  183359 gttaggtgaagttgcccttatgaaaaggtcaacattagaaagagagagctatcaatgagatgtaagcttcctcattgaaaaatattttacgtttttgttt 183260  T
Q  190 tgagtcgagagaaaagag 207  Q
    ||||||||||||||||||    
T  183259 tgagtcgagagaaaagag 183242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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