View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_16 (Length: 244)
Name: NF12651_low_16
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 549002 - 549232
Alignment:
| Q |
1 |
acccaaaagctatctcattgatttgttcatgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549002 |
acccaaaagctatctcattgatttgttcatgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgt |
549101 |
T |
|
| Q |
101 |
aatacactctaacttattttctttactttttgactctatttgaatgatggatcccacagggtaaacacaaatgatatcttgtatagattttattgcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549102 |
aatacactctaacttattttctttactttttgactctctttgaatgatgggtcccacagggtaaacacaaatgatatcttgtatagattttattgcatca |
549201 |
T |
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| Q |
201 |
tgttccaaataagtgaagctattgatgatga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
549202 |
tgttccaaataagtgaagctattgatgatga |
549232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23423626 - 23423396
Alignment:
| Q |
1 |
acccaaaagctatctcattgatttgttcatgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423626 |
acccaaaagctatctcattgatttgttcatgagtgagtgctccaccactcccaaaagagatgaacaaaacagattttgaaggcttattgttcaaccatgt |
23423527 |
T |
|
| Q |
101 |
aatacactctaacttattttctttactttttgactctatttgaatgatggatcccacagggtaaacacaaatgatatcttgtatagattttattgcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423526 |
aatacactctaacttattttctttactttttgactctctttgaatgatgggtcccacagggtaaacacaaatgatatcttgtatagattttattgcatca |
23423427 |
T |
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| Q |
201 |
tgttccaaataagtgaagctattgatgatga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23423426 |
tgttccaaataagtgaagctattgatgatga |
23423396 |
T |
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