View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_17 (Length: 242)
Name: NF12651_low_17
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_17 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 10992124 - 10991900
Alignment:
| Q |
18 |
aagtgcagggttttagaagattagagagaaacagaaaaatttaaaacaaactttattgacttgagaatataatgcttctcatattattaatcagcaacta |
117 |
Q |
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| T |
10992124 |
aagtgcagggttttagaagattagagagaaacagaaaaatttaaaacaaactttattgacttgagaatataatgcttctcatattattaatcagcaacta |
10992025 |
T |
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| Q |
118 |
ggcataggtatttatatacaaaaactgtnnnnnnnnctattacaaactagttatcttaagtttacttaaccgacaagttaacccttgtttttctcgactt |
217 |
Q |
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| T |
10992024 |
ggcataggtatttatatacaaaaactgtaaaaaaaactattacaaactagttatcttaagtttacttaaccgacaagttaacccttgtttttctcgactt |
10991925 |
T |
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| Q |
218 |
ttaactaactcaaatgataaactct |
242 |
Q |
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| T |
10991924 |
ttaactaactcaaatgataaactct |
10991900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 12748595 - 12748738
Alignment:
| Q |
99 |
tattattaatcagcaactaggcataggtatttatatacaaaaactgtnnnnnnnnctattacaaactagttatcttaagtttacttaaccgacaagttaa |
198 |
Q |
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| T |
12748595 |
tattatttattagtaactaggcataagtatttatatacaaaa-ctgttacaaactttataacaaactagttatcttcggtttacttaaccaacaagttta |
12748693 |
T |
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| Q |
199 |
cccttgtttt-tctcgacttttaactaactcaaatgataaactct |
242 |
Q |
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| T |
12748694 |
cccttgttttccctcaacttctaactaactcaaaatataaactct |
12748738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 12748190 - 12748235
Alignment:
| Q |
60 |
aaaacaaactttattgacttgagaatataatgcttctcatattatt |
105 |
Q |
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| T |
12748190 |
aaaataaactttattaacttgagaatataatacttcttatattatt |
12748235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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