View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_18 (Length: 240)
Name: NF12651_low_18
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37240386 - 37240605
Alignment:
| Q |
1 |
ctaaactcatttgttttagcactagattttgtcattgaacataacttaagatatgtgaatatttgaattgcagatggctcaacttgggagagcatgtacg |
100 |
Q |
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| T |
37240386 |
ctaaactcatttgttttagcactagattttgtcattgaacataacttaagatatgtgaatatttgaattgcagatggctcaacttgggagagcatgtacg |
37240485 |
T |
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| Q |
101 |
agagacaatccgctactacgcccaagcatgagatctatagttgttgctcttatgacactttcatcaccaactgaagattgtgatgatgactcttcatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37240486 |
agagacaatccgctactacgcccaagcatgagatctatagttgttgctcttatgacactttcatcaccaactgaagattgtgatgatgactcttcatatg |
37240585 |
T |
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| Q |
201 |
aaaaacaatctctcataaat |
220 |
Q |
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|||| ||||||||||||||| |
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| T |
37240586 |
aaaatcaatctctcataaat |
37240605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 37316601 - 37316779
Alignment:
| Q |
41 |
ataacttaagatatgtgaatatttgaattgcagatggctcaacttgggagagcatgtacgagagacaatccgctactacgcccaagcatgagatctatag |
140 |
Q |
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|||||||||||| |||||| ||||||||| ||||||| |||||||| |||| |||||| | ||||||||| |||||||| ||||| ||||||||||||| |
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| T |
37316601 |
ataacttaagatg-gtgaatgtttgaattgtagatggcacaacttggaagagaatgtacaaaagacaatccactactacgtccaagtatgagatctatag |
37316699 |
T |
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| Q |
141 |
ttgttgctcttatgacactttcatcaccaactgaagattgtgatgatgactcttcatatgaaaaacaatctctcataaat |
220 |
Q |
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| T |
37316700 |
ttgtttctcttatgtcactcttatcacctagtgaagattgtgatggtgacacttccgatgaaaatcaaactatcataaat |
37316779 |
T |
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