View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_22 (Length: 224)
Name: NF12651_low_22
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 196774 - 196569
Alignment:
| Q |
16 |
gaagaaggtctgaacaaggtgatgctcctaatgaatgacaaagtaggttagagaagaagagcttaattaacgcattaatgnnnnnnntaatcaaattaca |
115 |
Q |
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| T |
196774 |
gaagaaggtctgaacaaggtgatgctcctaatgaatgacaaagtaggttagagaagaagagcttgattaacgcattaatgaaaaaaataatcaaattaca |
196675 |
T |
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| Q |
116 |
aacttaccctttagcttgactttgttttttcaaaaagaaaagttggagttttttgtccaaaccaaaaggtgttcaatgctaaaccacacattctattttc |
215 |
Q |
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| T |
196674 |
aacttaccctttagcttgactttgttttttcaaaaagaaaagttggagttttttgtccaaatcaaaaggtgttcaatgctaaaccacacattctattttc |
196575 |
T |
|
| Q |
216 |
ttgatg |
221 |
Q |
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|||||| |
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| T |
196574 |
ttgatg |
196569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 197214 - 197283
Alignment:
| Q |
145 |
tcaaaaagaaaagttggagttttttgtccaaaccaaaaggtgttcaatgctaaaccacacattctatttt |
214 |
Q |
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| T |
197214 |
tcaagaaggaaagttggagttttttctctaaatcaaaaggtgttcaatgctaaaacacaccttctatttt |
197283 |
T |
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Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 45436787 - 45436671
Alignment:
| Q |
103 |
taatcaaattacaaacttaccctttagcttgactttgttttttcaaaaagaaaagttggagttttttgtccaaaccaaaaggtgttcaatgctaaaccac |
202 |
Q |
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| T |
45436787 |
taatcaaattacaaacttgccctttagcttgactttgattt--caaaaagaaaagttggagttttttatccaaaccaaaaggtgttcaatgctaaaacac |
45436690 |
T |
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| Q |
203 |
acattctattttcttgatg |
221 |
Q |
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| T |
45436689 |
acattctattttcttgatg |
45436671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 31919459 - 31919520
Alignment:
| Q |
142 |
ttttcaaaaagaaaagttggagttttttgtccaaaccaaaaggtgttcaatgctaaaccaca |
203 |
Q |
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| T |
31919459 |
tttttaaaaagaaaagtaagggttttttgtctaaataaaaaggtgttcaatgctaaaacaca |
31919520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 18343327 - 18343391
Alignment:
| Q |
142 |
ttttcaaaaagaaaagttggagt-tttttgtccaaaccaaaa-ggtgttcaatgctaaaccacac |
204 |
Q |
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|||| |||||| |||||||| || ||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
18343327 |
tttttaaaaaggaaagttggggtgtttttgtccaaacaaaaaaggtgttcaatgctaaaacacac |
18343391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 1297323 - 1297267
Alignment:
| Q |
149 |
aaagaaaagttggagttttttgtccaaaccaa-aaggtgttcaatgctaaaccacac |
204 |
Q |
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| T |
1297323 |
aaaggaaagttggagtgttttgtccaaataaagaaggtgttcaatgctaaaacacac |
1297267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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