View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_24 (Length: 219)
Name: NF12651_low_24
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 8268895 - 8268986
Alignment:
| Q |
11 |
agcagagaaaagtggtgtccctgcattataatatttacattatatgaccgcatcaggcaaacaaaagtcaaactcaattcaataatgcaccg |
102 |
Q |
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| T |
8268895 |
agcagagaaaagtggtgtccctgcattataatattttcattatatgaccgcatcaggcaaacaaaagtcaaactcaattcaataatgcaccg |
8268986 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 8269053 - 8269089
Alignment:
| Q |
169 |
taactccagcagaaagatggatccctgcgtgatgtcc |
205 |
Q |
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| T |
8269053 |
taactccagcaaaaagatggatccctgcgtaatgtcc |
8269089 |
T |
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