View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12651_low_25 (Length: 218)

Name: NF12651_low_25
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12651_low_25
NF12651_low_25
[»] chr4 (17 HSPs)
chr4 (6-172)||(50251177-50251343)
chr4 (47-172)||(45372426-45372551)
chr4 (79-163)||(7822585-7822669)
chr4 (41-163)||(7238098-7238220)
chr4 (80-172)||(7904649-7904741)
chr4 (79-161)||(7813096-7813178)
chr4 (121-163)||(49041516-49041558)
chr4 (42-148)||(50668622-50668728)
chr4 (115-172)||(7771056-7771113)
chr4 (79-163)||(7800253-7800337)
chr4 (42-172)||(7774198-7774328)
chr4 (42-148)||(48902529-48902635)
chr4 (79-172)||(7907941-7908034)
chr4 (79-144)||(45366618-45366683)
chr4 (112-172)||(48170955-48171018)
chr4 (115-172)||(48891061-48891118)
chr4 (79-163)||(49044607-49044691)
[»] chr3 (2 HSPs)
chr3 (41-171)||(11006332-11006462)
chr3 (79-149)||(47452299-47452369)
[»] chr8 (3 HSPs)
chr8 (112-168)||(12199956-12200012)
chr8 (112-168)||(12444384-12444440)
chr8 (66-149)||(15348465-15348548)
[»] chr5 (2 HSPs)
chr5 (85-172)||(29687673-29687760)
chr5 (44-172)||(1812006-1812134)
[»] chr6 (1 HSPs)
chr6 (109-163)||(21980022-21980076)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 50251343 - 50251177
Alignment:
Q  6 gaagcaaaggatggagaggaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaa 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50251343 gaagcaaaggatggagaagaagacacagccaaaagtgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaa 50251244  T
Q  106 ttaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251243 ttaaagtgggtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 50251177  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 45372551 - 45372426
Alignment:
Q  47 tgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctga 146  Q
    ||||||| |||||||| | ||||||| || | |||||||| |||||| |||| ||||  || || ||||||| |||||||||||||||| ||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  147 tccccactgtgcaaatttgcattttc 172  Q
    ||| || | ||||||||  |||||||    
T  45372451 tcctcattttgcaaattcacattttc 45372426  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 7822585 - 7822669
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 163  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||||||||||| ||||||||    
T  7822585 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaatt 7822669  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 7238220 - 7238098
Alignment:
Q  41 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 140  Q
    ||||||||||||| ||| | ||||  |||||| |  | ||||||||||||||| |||| ||    || || ||||||| |||||||||||||||||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  141 ctctgatccccactgtgcaaatt 163  Q
    |||||| || |||| ||||||||    
T  7238120 ctctgaccctcactttgcaaatt 7238098  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 7904649 - 7904741
Alignment:
Q  80 ggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    ||||||| |||||| |||| ||||  || || ||||||| |||||  ||||||||||||||||||||||| |||| ||||||||  |||||||    
T  7904649 ggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttc 7904741  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 7813096 - 7813178
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaa 161  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||||||||||| ||||||| ||||||    
T  7813096 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaa 7813178  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 49041558 - 49041516
Alignment:
Q  121 aagtcttggttttctcttatctctgatccccactgtgcaaatt 163  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  49041558 aagtcttggttttctcttatctctgatccccattttgcaaatt 49041516  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 50668622 - 50668728
Alignment:
Q  42 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 141  Q
    |||||||| | |||||||||||| ||||||||| || |||||||| |||||   ||| ||||  || ||||| |||| ||| |||||||||||||| |||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatc 50668721  T
Q  142 tctgatc 148  Q
    || ||||    
T  50668722 tccgatc 50668728  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 7771056 - 7771113
Alignment:
Q  115 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    |||| |||||||||||||||||||||||||||||| |||| || |||||  |||||||    
T  7771056 gtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttc 7771113  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 7800253 - 7800337
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 163  Q
    |||||||| ||||||  ||| ||||  || |||||||||| ||| || |||||||||||| |||||||||||| || ||||||||    
T  7800253 aggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaatt 7800337  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 7774328 - 7774198
Alignment:
Q  42 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 141  Q
    |||||| ||||| |||||||| | |||||| ||  |  || |||| |||||| |||| || || || || ||||||| ||||   |||||||||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  142 tctgatccccactgtgcaaatttgcattttc 172  Q
    ||||||||||| | ||||||||  |||||||    
T  7774228 tctgatccccattttgcaaattcacattttc 7774198  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 48902529 - 48902635
Alignment:
Q  42 gtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatc 141  Q
    |||||| ||||| ||||||||||  ||||||||     ||||||| || ||| ||||||| |  || || ||||||| |||||||||||||||||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  142 tctgatc 148  Q
    |||||||    
T  48902629 tctgatc 48902635  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 7907941 - 7908034
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    |||||||| |||||| |||| | ||  || |||| ||||  |||||| ||||||||||||||||||| |||||| | ||||||||  |||||||    
T  7907941 aggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttc 7908034  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 45366683 - 45366618
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctct 144  Q
    ||||| ||||||||| |||| ||||  || ||||| |||| ||||| |||||||||||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctct 45366618  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 48171018 - 48170955
Alignment:
Q  112 tgtgtttctaagtcttggttttctcttatctc---tgatccccactgtgcaaatttgcattttc 172  Q
    ||||||| ||||||||||||| ||||||||||   |||||| |||| |||||||| ||||||||    
T  48171018 tgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttc 48170955  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 48891061 - 48891118
Alignment:
Q  115 gtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    |||| ||||||||||||||||||| |||| ||||| || | |||||||| ||||||||    
T  48891061 gtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttc 48891118  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 49044691 - 49044607
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 163  Q
    ||||||||||||| | ||||  |||  || |||||||||| |||||  |||||||||||||||||| |  |||||| ||||||||    
T  49044691 aggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaatt 49044607  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 11006462 - 11006332
Alignment:
Q  41 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttat 140  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | || ||||  || |||||||||| |||||| |||||  |||||||    
T  11006462 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 11006363  T
Q  141 ctctgatccccactgtgcaaatttgcatttt 171  Q
    ||||||||| |||| |||||| | |||||||    
T  11006362 ctctgatcctcactttgcaaaatcgcatttt 11006332  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 47452369 - 47452299
Alignment:
Q  79 aggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatcc 149  Q
    |||||||| |||||| ||||  |||  || |||||  |||||||||| |||||||||||||||||||||||    
T  47452369 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 47452299  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 12199956 - 12200012
Alignment:
Q  112 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 168  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12199956 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12200012  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 12444384 - 12444440
Alignment:
Q  112 tgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcat 168  Q
    ||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  12444384 tgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaattcgcat 12444440  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 15348465 - 15348548
Alignment:
Q  66 tcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatcc 149  Q
    ||||||| |||  ||||| || |||||| |||| ||||  || || || |||| ||||||||||||||||||||||||||||||    
T  15348465 tcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcc 15348548  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 29687673 - 29687760
Alignment:
Q  85 ccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttgcattttc 172  Q
    ||||||||| |||| ||||  || |||||||||| |||||||||||||||||| || ||| | || |||| ||||||||  |||||||    
T  29687673 ccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttc 29687760  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 1812006 - 1812134
Alignment:
Q  44 atctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctctcatacaattaaagtgtgtttctaagtcttggttttctcttatctc 143  Q
    |||| ||||| ||| |||||  |||||||||  | ||||| |||||||||  ||||||||  |  || || |||| |||||  |||||||||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T
Q  144 tgatccccactgtgcaaatttgcattttc 172  Q
      ||||||||| ||||||||  |||||||    
T  1812106 aaatccccactttgcaaattatcattttc 1812134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 21980076 - 21980022
Alignment:
Q  109 aagtgtgtttctaagtcttggttttctcttatctctgatccccactgtgcaaatt 163  Q
    |||||||||| |||||||||||||||||| |||||| ||||| ||| ||| ||||    
T  21980076 aagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaatt 21980022  T

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