View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12651_low_28 (Length: 205)

Name: NF12651_low_28
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12651_low_28
NF12651_low_28
[»] chr2 (18 HSPs)
chr2 (8-187)||(39152396-39152575)
chr2 (22-177)||(39473475-39473630)
chr2 (43-155)||(39459096-39459208)
chr2 (22-122)||(39137759-39137859)
chr2 (22-154)||(39215477-39215609)
chr2 (56-152)||(39137687-39137783)
chr2 (24-134)||(39397917-39398027)
chr2 (25-154)||(39369953-39370082)
chr2 (22-121)||(39222763-39222862)
chr2 (92-154)||(2361524-2361586)
chr2 (24-134)||(39468204-39468314)
chr2 (22-82)||(39414848-39414908)
chr2 (46-121)||(39161720-39161795)
chr2 (46-121)||(39207399-39207474)
chr2 (99-154)||(39414883-39414938)
chr2 (99-156)||(39381612-39381669)
chr2 (22-87)||(39421898-39421963)
chr2 (64-132)||(44895631-44895699)
[»] chr7 (2 HSPs)
chr7 (22-122)||(19807709-19807809)
chr7 (56-134)||(19807655-19807733)
[»] chr6 (1 HSPs)
chr6 (24-134)||(16113164-16113274)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 39152575 - 39152396
Alignment:
Q  8 gctcgttcactggattattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaattt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39152575 gctccttcactggattattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaattt 39152476  T
Q  108 cttcttttttgatttaagctccttaacctgacctttgaattcctccttcccttttttaaacttcttcactagaccggtga 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39152475 cttcttttttgatttaagctccttaacctgacctttgaattcctccttcccttttttaaacttcttcactagaccggtga 39152396  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39473475 - 39473630
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||||||||||||| |||||||| |||| ||||||||||||| || ||| |||||| |||||||||| | ||| ||||| |||||||||| |||    
T  39473475 ttattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttatt 39473574  T
Q  122 taagctccttaacctgacctttgaattcctccttcccttttttaaacttcttcact 177  Q
    |||||||||||||| ||||||||||||||||||||    ||||||||| |||||||    
T  39473575 taagctccttaacccgacctttgaattcctccttcttcgttttaaactccttcact 39473630  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 39459208 - 39459096
Alignment:
Q  43 tctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagctccttaacctgacctt 142  Q
    ||||||| | ||| |||||||||||||||||||  |||||||||||||| |||| ||||||||| |||||||||||| || |||| ||||||||||||||    
T  39459208 tctttccgctgttcttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaacctgacctt 39459109  T
Q  143 tgaattcctcctt 155  Q
    |||||||||||||    
T  39459108 tgaattcctcctt 39459096  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 39137859 - 39137759
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||| | ||||| || ||| |||||| || ||||| ||||||||    
T  39137859 ttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaatcctcgacttggctttcaagttgcttctcttttgatt 39137760  T
Q  122 t 122  Q
    |    
T  39137759 t 39137759  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 39215609 - 39215477
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||||| |||| || ||||||||||||  |||||||||||||||||||| ||  |||  |||||| ||  ||||||||| |||||||||| |      
T  39215609 ttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaac 39215510  T
Q  122 taagctccttaacctgacctttgaattcctcct 154  Q
    | |||||||||||| | ||||||||||||||||    
T  39215509 tgagctccttaacccggcctttgaattcctcct 39215477  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 39137783 - 39137687
Alignment:
Q  56 tttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagctccttaacctgacctttgaattcctc 152  Q
    |||||| |||||||||||||| |||||| |||||||| ||| |||| |||| ||||||||||||||| ||||||||||| ||| ||| ||| |||||    
T  39137783 tttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatttgagctccttaacttgatcttcgaactcctc 39137687  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 39397917 - 39398027
Alignment:
Q  24 attctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgattta 123  Q
    ||||||||||||||| || | ||||||||||| ||||| |||||| ||||||| |||||| |||||||| ||| ||||||| | ||| |||| | |||      
T  39397917 attctcttttgactcaagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttattttgtaattcg 39398016  T
Q  124 agctccttaac 134  Q
    |||||||||||    
T  39398017 agctccttaac 39398027  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 39370082 - 39369953
Alignment:
Q  25 ttctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaa 124  Q
    ||||||||| |||| || ||||||||||||  |||||||||||| ||||| | |||||||| ||| || ||| ||||||||| |||| ||| ||| || |    
T  39370082 ttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttcctttctgacttga 39369983  T
Q  125 gctccttaacctgacctttgaattcctcct 154  Q
     |||||||||  ||||||  ||||||||||    
T  39369982 actccttaactcgaccttcaaattcctcct 39369953  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 39222862 - 39222763
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||| |||||| || |  ||||| |||| |||||||||||||||||||| ||| || ||||| || ||| |||| || | ||||||||||||||    
T  39222862 ttattctcttctgactcaagtttattccatcgttcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgatt 39222763  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 2361586 - 2361524
Alignment:
Q  92 cctggatttcaaatttcttcttttttgatttaagctccttaacctgacctttgaattcctcct 154  Q
    ||||| ||||||||| |||||||||||||| ||||||||| ||||| | || |||||||||||    
T  2361586 cctggctttcaaattgcttcttttttgattcaagctccttcacctgcctttcgaattcctcct 2361524  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 39468314 - 39468204
Alignment:
Q  24 attctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgattta 123  Q
    ||||||||||||||  |  ||||| |||||||  ||||||||||| ||||||| |||||| |||||||| ||  | ||||| |  |||||||||||||      
T  39468314 attctcttttgacttcaattctttacaccgttcatcaaattgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcg 39468215  T
Q  124 agctccttaac 134  Q
    |||||||||||    
T  39468214 agctccttaac 39468204  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 39414848 - 39414908
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttga 82  Q
    |||||||| |||| || ||| |||||||| |||| |||||||||||||||||||| |||||    
T  39414848 ttattctcatttgtcttgagttctttccatcgttcttcaaattgcttctcttttgatttga 39414908  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 39161795 - 39161720
Alignment:
Q  46 ttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||  ||||||||| |||| ||||| ||||||||||||||| ||  ||||||| | ||| ||||||||||    
T  39161795 ttccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgatt 39161720  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 39207399 - 39207474
Alignment:
Q  46 ttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||  ||||||||| |||| ||||| ||||||||||||||| ||  ||||||| | ||| ||||||||||    
T  39207399 ttccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgatt 39207474  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 39414883 - 39414938
Alignment:
Q  99 ttcaaatttcttcttttttgatttaagctccttaacctgacctttgaattcctcct 154  Q
    |||||||| ||||| ||||||||| || |||||||| ||||||||||| |||||||    
T  39414883 ttcaaattgcttctcttttgatttgagttccttaacttgacctttgaactcctcct 39414938  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 39381612 - 39381669
Alignment:
Q  99 ttcaaatttcttcttttttgatttaagctccttaacctgacctttgaattcctccttc 156  Q
    ||||||||||||||| ||||| |  | ||||||||| |||||||||| ||||||||||    
T  39381612 ttcaaatttcttcttctttgactcgaactccttaacttgacctttgagttcctccttc 39381669  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 39421898 - 39421963
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcc 87  Q
    |||||||||||||||| ||| ||||||||  ||| |||||||| |||||| |||  ||||||||||    
T  39421898 ttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 39421963  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 44895631 - 44895699
Alignment:
Q  64 tgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagctcctta 132  Q
    ||||||||||||| ||||||| ||||||| ||| |||||||   |||||||| |||||  |||||||||    
T  44895631 tgcttctcttttgatttgaaggcctcaacttggctttcaaaacgcttcttttctgattcgagctcctta 44895699  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 19807809 - 19807709
Alignment:
Q  22 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 121  Q
    |||||||||||||||||||| |||||||||| || ||||| ||| |||||||||| |||| | ||||| || ||| |||||| || ||||| ||||||||    
T  19807809 ttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatt 19807710  T
Q  122 t 122  Q
    |    
T  19807709 t 19807709  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 19807733 - 19807655
Alignment:
Q  56 tttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatttaagctccttaac 134  Q
    |||||| |||||||||||||| ||||||||||||||| ||| |||| |||| |||||||||| |||| | |||||||||    
T  19807733 tttcaagttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttctttttttatttgaactccttaac 19807655  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 16113274 - 16113164
Alignment:
Q  24 attctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgattta 123  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||| || |||| |||||| | |||||| ||| |||| || | ||| ||||||||||      
T  16113274 attctcttttgattcgagttctttccaccgttcttcaaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgattcg 16113175  T
Q  124 agctccttaac 134  Q
    | |||||||||    
T  16113174 atctccttaac 16113164  T

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