View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_3 (Length: 521)
Name: NF12651_low_3
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 1110999 - 1111509
Alignment:
| Q |
1 |
tcaagtgaaacaatcacatgttgctcaacggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactt |
100 |
Q |
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| T |
1110999 |
tcaagtgaaacaatcacatgttgctcaacggtaactctattagaattccaagatagattatcctctaaacaaatgtaattatcccgcatgctgagaactt |
1111098 |
T |
|
| Q |
101 |
tcaccatgcttcttgcaacacgacgctccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacg |
200 |
Q |
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| T |
1111099 |
tcaccatgcttcttgcaacacgacgctccttatcatacttactaccgaacgctaccaccttataagttccggtggaattatcataaccaaaagagtaacg |
1111198 |
T |
|
| Q |
201 |
aaaataaccattcaaatggggtgnnnnnnntacagatgattttgtcctagtggctggtttccagagaacccaatgctgaatatcataattagtcaaacat |
300 |
Q |
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| T |
1111199 |
aaaataaccattcaaatggggtgaaaaaaatacagatgattttgtcctagtggctgttttccagagaacccaatgctgaatatcataattagtcaaacat |
1111298 |
T |
|
| Q |
301 |
agtaaggatcatattgaatggtcaacaaattctcaagtaaacaataaattgggaaggttacaacataccaatcaatatccttcttagaaggtctcgacgg |
400 |
Q |
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| T |
1111299 |
agtaaggatcatattgaatggtcaacaaattctcaagtaaacaataaattgggaaggttacaacataccaatcaatatccttcttagaaggtctcgacgg |
1111398 |
T |
|
| Q |
401 |
tagtgctagctgtgggtttcgtttcaactatcgtttttgggtgcagttttttacaagggtggttacatggttttaatttgtagggttttgattgttttct |
500 |
Q |
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| T |
1111399 |
tagtgctagctgtgggtctcgtttcaactatcgtttttgggtgcagttttttacaagggtggttacatggttttaatttgtagggttttgattgttttct |
1111498 |
T |
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| Q |
501 |
ttgctcctatg |
511 |
Q |
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| T |
1111499 |
ttgctcctatg |
1111509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 10460244 - 10460202
Alignment:
| Q |
151 |
gctaccaccttataagttccggtggaattatcataaccaaaag |
193 |
Q |
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| T |
10460244 |
gctaccaccttataagtttcagtcgaattatcataaccaaaag |
10460202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 25376741 - 25376695
Alignment:
| Q |
151 |
gctaccaccttataagttccggtggaattatcataaccaaaagagta |
197 |
Q |
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| T |
25376741 |
gctaccaccttataagttccagtggaattatcatggccaaaagagta |
25376695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 16470756 - 16470829
Alignment:
| Q |
298 |
catagtaaggatcatattgaa---tggtcaacaaattctcaagtaaacaataaattgggaaggttacaacatac |
368 |
Q |
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| T |
16470756 |
catagtaaggatcatattgaatggtggtcaacgagttctcaagtaaaagagaaattgagaaggttacaatatac |
16470829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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