View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12651_low_8 (Length: 394)

Name: NF12651_low_8
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12651_low_8
NF12651_low_8
[»] chr7 (2 HSPs)
chr7 (1-386)||(32135806-32136191)
chr7 (14-130)||(39998998-39999115)
[»] chr3 (2 HSPs)
chr3 (68-293)||(30265541-30265758)
chr3 (14-62)||(10866906-10866954)
[»] chr4 (2 HSPs)
chr4 (8-293)||(30332968-30333244)
chr4 (14-149)||(33266525-33266660)
[»] chr5 (1 HSPs)
chr5 (28-293)||(13376796-13377055)
[»] chr1 (1 HSPs)
chr1 (14-158)||(7054577-7054720)
[»] chr8 (2 HSPs)
chr8 (14-173)||(38587759-38587917)
chr8 (12-131)||(35387742-35387861)
[»] chr2 (7 HSPs)
chr2 (14-143)||(31840273-31840403)
chr2 (29-95)||(41287953-41288019)
chr2 (84-145)||(4473394-4473455)
chr2 (165-282)||(4473176-4473285)
chr2 (166-290)||(31840499-31840614)
chr2 (14-93)||(4473594-4473673)
chr2 (92-159)||(41288142-41288209)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 32136191 - 32135806
Alignment:
Q  1 attcgtctaagaacatctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgt 100  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32136191 attcgtctaagaacatctacaatatcagaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcatatgaggattcaagaacaaccatgt 32136092  T
Q  101 agttttactttaatgtaaaaatacaatgtttgttcttaatttattttaattggatccctcagatcagtgttctgaaatgttctctaggaagaaccgttct 200  Q
    | ||||||| ||||| |||| ||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||  ||| |||||||||||    
T  32136091 aattttactctaatgcaaaactacaaggtttgttcttaatttattctaattgggtccctcaaatcagtgttctgaaatgttcttcagggagaaccgttct 32135992  T
Q  201 ccaacttgacatccatgtcattccactccaatggaaatatgggaaagaacatagaaacaagttcttatggcctcaagaacatagcatagaacatatgctc 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32135991 ccaacttgacatccatgtcattccactccaatgaaaatatgggatagaacatagaaacaagttcttatggcctcaataacatagcatagaacatatgctc 32135892  T
Q  301 taactacgaccatgtgtccaaacagttccaggcatcccaaacaccaaaaagcaccagaaacttgttgttccactttaatctctgct 386  Q
    |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32135891 taactacgaccacgtgtccaaacagtttcgggcatcccaaacaccaaaaagcaccagaaacttgttgttccactttaatctttgct 32135806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 39999115 - 39998998
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtag-ttttacttta 112  Q
    ||||||||||||  |||||| |||| | |||||||||||||||||||||| || ||||  ||||||  ||||||||||||| ||| ||| ||||| |  |    
T  39999115 catctacaatgctagaacaagatttgtattcttcaagcattttggtgggttcatcattaccacatggagattcaagaacaatcatatagtttttattcca 39999016  T
Q  113 atgtaaaaatacaatgtt 130  Q
    ||| ||||||||||||||    
T  39999015 atgcaaaaatacaatgtt 39998998  T

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Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 30265758 - 30265541
Alignment:
Q  68 cattgtcacatgaggattcaagaacaaccatgtagttttactttaatgtaaaaatacaatgtttgttcttaatttattttaattggatccctcagatcag 167  Q
    ||||| ||||||  ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||| ||||||||||| || |     
T  30265758 cattgccacatggcgattcaagaacaaccatgtagttttactccaatgcaaaaatacaatgtttgttcttaatttattctaagtggatccctcacataaa 30265659  T
Q  168 tgttctgaaatgttc-tctaggaagaaccgttctccaacttgacatccatgtcattccactccaatggaaatatgggaaagaacatagaaacaagttctt 266  Q
    ||||||  ||||||| || ||| ||||||||||||||||||| ||||||||||||| |||||||        |||||| |||||||||||||||||||||    
T  30265658 tgttctccaatgttcttcgagg-agaaccgttctccaacttggcatccatgtcatttcactcca--------atgggatagaacatagaaacaagttctt 30265568  T
Q  267 atggcctcaagaacatagcatagaaca 293  Q
    |||||||||||||||||||||||||||    
T  30265567 atggcctcaagaacatagcatagaaca 30265541  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 10866954 - 10866906
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtggg 62  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||||||    
T  10866954 catctacaatgctagaacaatatttatgttcttgaagcattttggtggg 10866906  T

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Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 30333244 - 30332968
Alignment:
Q  8 taagaacatctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagtttta 107  Q
    ||||| |||||| |||||  ||| |||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  30333244 taagagcatctaaaatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgccacatgaggattcaagaacaatcatatagtttta 30333145  T
Q  108 ctttaatgtaaaaatacaatgtttgttcttaatttattttaattggatccctcagatcagtgttctgaaatgttctctaggaagaaccgttctccaactt 207  Q
    ||  ||||  ||||||||||||||||| ||| |||||| ||| ||| || |||| |||||||||||  ||||||||  ||| |||||||||||||||| |    
T  30333144 ctcgaatg-caaaatacaatgtttgtttttagtttattctaagtgggtctctcacatcagtgttcttcaatgttcttcagggagaaccgttctccaacat 30333046  T
Q  208 gacatccatgtcattccactccaatggaaatatgggaaagaacatagaaacaagttcttatggcctcaagaacatagcatagaaca 293  Q
    | |||||||||| ||||||||||        |||| | |||||||| ||||||||| |||| ||||||||||||||| | ||||||    
T  30333045 ggcatccatgtcgttccactcca--------atggcatagaacataaaaacaagtttttattgcctcaagaacatagtaaagaaca 30332968  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 33266660 - 33266525
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagttttactttaa 113  Q
    ||||||||| ||  |||||||||||||||| |||||||||||||||||||||| |||||||| ||| | | ||||||||||  |||||||||||||  ||    
T  33266660 catctacaaagctagaacaaaatttatgtttttcaagcattttggtgggtccatcattgtcatatgggaagtcaagaacaaatatgtagttttactccaa 33266561  T
Q  114 tgtaaaaatacaatgtttgttcttaatttattttaa 149  Q
    || |||| ||||||||||||||||||||||||||||    
T  33266560 tgcaaaattacaatgtttgttcttaatttattttaa 33266525  T

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Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 28 - 293
Target Start/End: Original strand, 13376796 - 13377055
Alignment:
Q  28 gaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgagg--attcaagaacaaccatgtagttttactttaatgtaaaaataca 125  Q
    |||||||||||||||| |||||  ||||||||||||||| ||||||| |||| |   ||||||||||||||||||||||||||| ||||| ||||||| |    
T  13376796 gaacaaaatttatgtttttcaaatattttggtgggtccatcattgtctcatgggatcattcaagaacaaccatgtagttttactctaatgcaaaaatata 13376895  T
Q  126 atgtttgttcttaatttattttaattggatccctcagatcagtgttctgaaatgttctctaggaagaa-ccgttctccaacttgacatccatgtcattcc 224  Q
    ||||||||| |||||||||||||| ||| | ||||| |||||||| ||  |||||||| |||| |||| |||||||||||| || |||||||||||||||    
T  13376896 atgtttgtttttaatttattttaagtgggt-cctcatatcagtgtcctccaatgttctttagggagaatccgttctccaacatggcatccatgtcattcc 13376994  T
Q  225 actccaatggaaatatgggaaagaacatagaaacaagttcttatggcctcaagaacatagcatagaaca 293  Q
    ||||||        ||| || |||||||| || |||||||||| | ||||||||||||| |||||||||    
T  13376995 actcca--------atgagatagaacataaaatcaagttcttacgacctcaagaacatatcatagaaca 13377055  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 7054720 - 7054577
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagttttactttaa 113  Q
    ||||||||||||  |||||| |||| |||||||||||||||  |||||||||| ||||| |||||| |||||||||||||||||||||||||||||  ||    
T  7054720 catctacaatgctagaacaagatttgtgttcttcaagcattg-ggtgggtccatcattgccacatgtggattcaagaacaaccatgtagttttactccaa 7054622  T
Q  114 tgtaaaaatacaatgtttgttcttaatttattttaattggatccc 158  Q
    || ||||||||||| ||||||||||||||||||||| ||| ||||    
T  7054621 tgcaaaaatacaatatttgttcttaatttattttaagtgggtccc 7054577  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 38587917 - 38587759
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagttttactttaa 113  Q
    ||||||||||||  ||| || |||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||| ||||| ||||  ||    
T  38587917 catctacaatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgccacttggggattcaagaacaaccat-tagttatactccaa 38587819  T
Q  114 tgtaaaaatacaatgtttgttcttaatttattttaattggatccctcagatcagtgttct 173  Q
    || ||||||||||||||||||||||||||||| ||| ||| || |||| ||||| |||||    
T  38587818 tgcaaaaatacaatgtttgttcttaatttattataagtgggtctctcacatcagagttct 38587759  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 35387742 - 35387861
Alignment:
Q  12 aacatctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagttttacttt 111  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||||      
T  35387742 aacatctacaatgctagaacaaaatttatgttcttcaaacattttgttgggtccatcattgtcacgtgcggattcaagaacaaccatgtagttttactcc 35387841  T
Q  112 aatgtaaaaatacaatgttt 131  Q
    |||  |||||||||||||||    
T  35387842 aatacaaaaatacaatgttt 35387861  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 31840273 - 31840403
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaaccatgtagttttactttaa 113  Q
    ||||||||||||  |||||| |||||||| |||||| |||||| |||| |||| |||||   ||||| ||||||||||||||||||||||||||||  ||    
T  31840273 catctacaatgctagaacaagatttatgtccttcaaacattttagtggatccatcattgatccatgaagattcaagaacaaccatgtagttttactccaa 31840372  T
Q  114 tgtaaaaatacaat-gtttgttcttaattta 143  Q
    |  |||||||||||  ||| |||||||||||    
T  31840373 tacaaaaatacaatatttttttcttaattta 31840403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 41287953 - 41288019
Alignment:
Q  29 aacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaacaac 95  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  41287953 aacaagatttatgttcttcaagcattttggtgggtccatcattgccacatgaggatttaagaacaac 41288019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 4473455 - 4473394
Alignment:
Q  84 ttcaagaacaaccatgtagttttactttaatgtaaaaatacaatgtttgttcttaatttatt 145  Q
    ||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  4473455 ttcaagaacaaccatgtagttttactccaatgcaaaaatacaatatttgttcttaatttatt 4473394  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 4473285 - 4473176
Alignment:
Q  165 cagtgttctgaaatgttctctaggaagaaccgttctccaacttgacatccatgtcattccactccaatggaaatatgggaaagaacatagaaacaagttc 264  Q
    |||||||||  ||| ||||  ||| |||||||||||||||| || ||| |||||||||||||||||        |||||| |||||||| ||||||||||    
T  4473285 cagtgttctccaatattcttcagggagaaccgttctccaacatggcattcatgtcattccactcca--------atgggatagaacataaaaacaagttc 4473194  T
Q  265 ttatggcctcaagaacat 282  Q
    | |||||||| |||||||    
T  4473193 tcatggcctccagaacat 4473176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 31840499 - 31840614
Alignment:
Q  166 agtgttctgaaatgttctctaggaagaaccgttctccaacttgacatccatgtcattccactccaatggaaatatgggaaagaacatagaaacaagttct 265  Q
    ||||||||  ||||||||||||| |||||  ||||||||| || ||| ||||||||| |||| ||||||| |         ||||||| |||||||||||    
T  31840499 agtgttctccaatgttctctagggagaactattctccaacatggcattcatgtcattacactacaatggata---------gaacataaaaacaagttct 31840589  T
Q  266 tatggcctcaagaacatagcataga 290  Q
     ||| ||||||||||||||||||||    
T  31840590 catgccctcaagaacatagcataga 31840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 4473673 - 4473594
Alignment:
Q  14 catctacaatgccggaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcacatgaggattcaagaaca 93  Q
    ||||||||||||   || || |||||||||||| |||||||||| |||||||| ||||| || ||| |||||||||||||    
T  4473673 catctacaatgctaaaataagatttatgttctttaagcattttgatgggtccatcattgccatatggggattcaagaaca 4473594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 41288142 - 41288209
Alignment:
Q  92 caaccatgtagttttactttaatgtaaaaatacaatgtttgttcttaatttattttaattggatccct 159  Q
    ||||||||||||||||||  |||  ||||||| |||| |||||||||||||||||||| ||| |||||    
T  41288142 caaccatgtagttttactccaatccaaaaatataatgcttgttcttaatttattttaagtgggtccct 41288209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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