View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12651_low_9 (Length: 374)
Name: NF12651_low_9
Description: NF12651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12651_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 33628422 - 33628614
Alignment:
| Q |
1 |
gggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaattattgatg |
100 |
Q |
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| T |
33628422 |
gggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaattgttgatg |
33628521 |
T |
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| Q |
101 |
tattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctatcattca |
193 |
Q |
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| T |
33628522 |
tattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctataattca |
33628614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 43 - 327
Target Start/End: Original strand, 33624556 - 33624844
Alignment:
| Q |
43 |
cggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaat-tattgatgtattttttgaaacattatatgtactatttcttatatttgta |
141 |
Q |
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| T |
33624556 |
cggagaaggaaatcgtccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaaatatat--actatttcttatattagtg |
33624653 |
T |
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| Q |
142 |
ctagattttttaa-aattcagttttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgt |
240 |
Q |
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| T |
33624654 |
ctatattttttcagaagtcaatgttgcttagatttgatgaaatctataattcatagttgttaggagttcacttgtgttaaaggttagttaagaagtgtgt |
33624753 |
T |
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| Q |
241 |
taataattgagagtttttagcaagttaattagcatgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat |
327 |
Q |
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| T |
33624754 |
taataattgagagtttttagcaagttaattagaatgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat |
33624844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 33609941 - 33610006
Alignment:
| Q |
5 |
aaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttg |
70 |
Q |
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| T |
33609941 |
aaacattggttttggtgtcgatttgttaaaggagaagatcgtcaagaaaatcatccatgaagtttg |
33610006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 12059882 - 12059786
Alignment:
| Q |
164 |
ttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttag |
260 |
Q |
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| T |
12059882 |
ttgtttggatttgatcaaatccataattcatagttgttacgagtttacttgtgttacaggttagttaagaagtttgttattagatgagagattttag |
12059786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 12053171 - 12053055
Alignment:
| Q |
171 |
gatttgataaaa-tctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttagcaagttaat |
269 |
Q |
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| T |
12053171 |
gatttgataaaaatccataattcatagttgttaggagtttacttgtgttaca----agttaagaagtatgttagtagttgagaaattttagcaagtttct |
12053076 |
T |
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| Q |
270 |
tagcatgtgtgagtgtatatt |
290 |
Q |
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| T |
12053075 |
tagtaattgtgagtgtatatt |
12053055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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