View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_high_2 (Length: 381)
Name: NF12652_high_2
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 363
Target Start/End: Complemental strand, 52354103 - 52353765
Alignment:
| Q |
25 |
cagctacctacatgttgatataacggtatgtctatgaactcaaacggacttttccactggtgaagaacatagaagctcctacaaggcatcgtttgtataa |
124 |
Q |
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| T |
52354103 |
cagctacctacatgttgatataacggtatgtctatgaactcaaacggacttttccactggtgaagaacatagaaactcctacaaggcatcgtttgtataa |
52354004 |
T |
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| Q |
125 |
acagcataactaagtgcttatagcaataagtacttatgaataagttattgaattacagtcaaactgttttcatgtaaataaacagtcaaacttaaggaag |
224 |
Q |
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| T |
52354003 |
acagcttaactaagtgcttatagcaataagtacttatgaataagttattgaattacagtcaaactattttcatgtaaataaacagtcaaacttaaggaag |
52353904 |
T |
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| Q |
225 |
tctctaaaacagtttcactataaattcaaataagtcaatggaaacaaacaaataaagaaatggttcaaaaaacttagagcacaagaaatcatcaggttta |
324 |
Q |
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| T |
52353903 |
tctctaaaacagtttcacgataaattcaaataagtcaatcgaaacaaacaaataaagaaatggttcaaaaaacttagagcacaagaaatcatcaggttta |
52353804 |
T |
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| Q |
325 |
gcaacgaaaacgaacctggtgatgcgatgttggggaaga |
363 |
Q |
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| T |
52353803 |
gcaacgaaaacgaacctggtgatgcgatgttggggaaga |
52353765 |
T |
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