View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_high_6 (Length: 237)
Name: NF12652_high_6
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 49295268 - 49295065
Alignment:
| Q |
16 |
gcacagatttggtatatcttctaaaacttactacattaatttaattgattttaactccttcctctatttcatttcatagtaataatatgaatcattttct |
115 |
Q |
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| T |
49295268 |
gcacagatttggtatatcttctaaaacttactacattaatttaattgattttaactccttcctctatttcatttcatagtaataatatgaatcattttct |
49295169 |
T |
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| Q |
116 |
atgatacttcttgttataattttattaacttacgtgttcggggtgtggtttttatgaatctattattataggcaaagacaatagcaaagtttgcgaggat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49295168 |
atgatacttcttgttataattttattaacttacgtgttcggggtgtgttttttatgaatcta---ttataggcaaagacaatagcaaagtttgcgaggat |
49295072 |
T |
|
| Q |
216 |
gacagtg |
222 |
Q |
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||||||| |
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| T |
49295071 |
gacagtg |
49295065 |
T |
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