View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_low_1 (Length: 748)
Name: NF12652_low_1
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 464 - 732
Target Start/End: Original strand, 22669368 - 22669636
Alignment:
| Q |
464 |
acaaatacaatagtgcatattgaaattgtcaataatcttagacaacatataaggttttgaagagcattatgtggcctgcttggtctgcatgttaacatgg |
563 |
Q |
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| T |
22669368 |
acaaatacaatagtgcatattgaagttgtcaataatcttagacaacatataaggttttgaagggcagtatgtggcctgcttggtctgcatgttaacatgg |
22669467 |
T |
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| Q |
564 |
aagcttagcaaaaatggttgctcatgacatggtaaagaagtatcatggtcccttcnnnnnnngacaggcggaaatgcgatgttatactcaacaatgttta |
663 |
Q |
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| T |
22669468 |
aagcttagcaaaaatggttgctcatgacatggtaaagaaatatcatggtcccttcaaaaaaagacaggcggaaatgcgatgttatactcaacaatgttta |
22669567 |
T |
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| Q |
664 |
aaagaaatccacctaatgttaaaagtgcaaataggttgcttaattatcttgtctgcactagctttatct |
732 |
Q |
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| T |
22669568 |
aaagaaatccacctaatgttcaaagtgcaaataggttgcttaattatcttgtctgcactagctttatct |
22669636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22666039 - 22666275
Alignment:
| Q |
1 |
atgaaaaatgtatttgttcctatgttctttgtcactccatgaacttctggcgatctctagcagtggctggtggcttccaacattgagtgtctatcacatt |
100 |
Q |
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| T |
22666039 |
atgaaaaatgtatttgttcctatgttctttgtcactccatgaacttctggcgatctctagcagtggctggtggcttccaacattgagtgtctatcacatt |
22666138 |
T |
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| Q |
101 |
gtgcgattctttgacatcagagagtcatgcatataaggtgttactgctgatgatgagtgggaaagggaggtaagttttgtttatttgatcagttttttag |
200 |
Q |
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| T |
22666139 |
gtgcgattctttgacatcagagagtcatgcatataaggtgttactgctgatgatgagtgggaaagggaggtaagttttgtttatttgatcag----ttag |
22666234 |
T |
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| Q |
201 |
attgagtttgcagtcaacaagactctagcttattctctctc |
241 |
Q |
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| T |
22666235 |
attgagtttgcagtcaacaagactctagcttattctctctc |
22666275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 22666291 - 22666325
Alignment:
| Q |
252 |
gactctagcttattttccctcaagagacagactca |
286 |
Q |
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| T |
22666291 |
gactctagcttattttccctcaagagatagactca |
22666325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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