View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_low_4 (Length: 249)
Name: NF12652_low_4
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7948340 - 7948569
Alignment:
| Q |
1 |
ccaaggcagagaaagcaggtttattatcggcagccgagaaagcaggattatctctctcaacaatagagaaacttggtctcctttcaaaagcagaagaact |
100 |
Q |
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| T |
7948340 |
ccaaggcagagaaagcaggtttattatcggcagccgagaaagcaggattatctctctcaacaatagagaaacttggtctcctttcaaaagcagaagaact |
7948439 |
T |
|
| Q |
101 |
tggtgtcttatcagctgctactgatccatcaactccaggatcactcttcacactcagctttgttttgcttcttttaggtcctttgtttgtttatcttgtt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7948440 |
tggtgttttatcagctgctactgatccatcaactccaggatcactcttcacactcagctttgttttgcttcttttaggtcctttgtttgtttatcttgtt |
7948539 |
T |
|
| Q |
201 |
cccgaagataatgttgtcgaggttggattg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7948540 |
cccgaagataatgttgtcgaggttggattg |
7948569 |
T |
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