View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_low_7 (Length: 221)
Name: NF12652_low_7
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_low_7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 8074874 - 8074775
Alignment:
| Q |
122 |
ccattagtttgactaatatttgaaaagatgacacctgtgtaatttgtttaattttttaataatcatgcataaaatgttagagaaatgatatttgtacaac |
221 |
Q |
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| T |
8074874 |
ccattagtttgactaatatttgaaaagatgacacctgtgtaatttgtttaattttttaataatcatgcataaaatgttagagaaatgatatttgtacaac |
8074775 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 8074962 - 8074927
Alignment:
| Q |
21 |
agatttagaacgttggaaatattgattctcgtgaca |
56 |
Q |
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| T |
8074962 |
agatttagaacgttggaaatattgattctcgtgaca |
8074927 |
T |
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