View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12652_low_9 (Length: 201)
Name: NF12652_low_9
Description: NF12652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12652_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 37557046 - 37556875
Alignment:
| Q |
14 |
gcagagacaacttcagcccatttgttttgaagaccaacctggacaaagtcaaaagaatccataacaatatattaaatttgaaccattcatatgataataa |
113 |
Q |
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| T |
37557046 |
gcagagacaacttcagtccatttgttttgaagaccaacctggacaaagtcaaaagaatccataacaatatattaaatttgaaccattcatatgataataa |
37556947 |
T |
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| Q |
114 |
tacatatgaaaattacttaattaaaagcctctcttgactaatttatattatatagacacaacatattggatg |
185 |
Q |
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| T |
37556946 |
tacatatgaaaattacttaattaaaagcctctcttgactaatttatattatatagacacaacatattggatg |
37556875 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 41552232 - 41552171
Alignment:
| Q |
113 |
atacatatgaaaattacttaattaaaagcctctcttgactaatttatattatatagacacaacatatt |
180 |
Q |
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| T |
41552232 |
atacatatgaaaattacttaa----aagcctctcttgactaatttagat--tatagacacaacatatt |
41552171 |
T |
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