View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12653_high_1_N (Length: 399)
Name: NF12653_high_1_N
Description: NF12653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12653_high_1_N |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 244 - 399
Target Start/End: Complemental strand, 12867161 - 12867006
Alignment:
| Q |
244 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
343 |
Q |
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| T |
12867161 |
ccaaccattgtccacatccttaaaattatgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcttctggattgtttttc |
12867062 |
T |
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| Q |
344 |
atcttcttagaaactccagaatctggtgatgaagattttggccttttacctcgccg |
399 |
Q |
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| T |
12867061 |
atcttcttagaaactccagaagacggtgatgaagattttggccttttacctcgccg |
12867006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12867407 - 12867255
Alignment:
| Q |
1 |
agatctcttttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgct |
100 |
Q |
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| T |
12867407 |
agatctcttttaatgtatgtcatttggatcacacac--gaagaagttcttatcagaatgaaacttgttcttcactttatcatacaaaacttggcttcgct |
12867310 |
T |
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| Q |
101 |
ccttaagatcatc------accactaattcctcctaagaaattgagtaattcacc |
149 |
Q |
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| T |
12867309 |
ccttaagatcatcacaactacaactagttcctgctaagaaattgagtaattcacc |
12867255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 15134395 - 15134284
Alignment:
| Q |
246 |
aaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttcat |
345 |
Q |
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| T |
15134395 |
aaccattgttcatatccttaaaattatgaaattttgcttgagattggaatattttcttctcatgcttagattctttttgttcctctgggttgattttcat |
15134296 |
T |
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| Q |
346 |
cttcttagaaac |
357 |
Q |
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| T |
15134295 |
cttcttacaaac |
15134284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 49743020 - 49742916
Alignment:
| Q |
244 |
ccaaccattgtccacatccttaaaattacgaaatcttgcatgtgcttggacttttctcttctcatgcttagattctttttgttcctctggattatttttc |
343 |
Q |
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||||||||||||| |||||| || ||| |||| ||| | ||| ||||||||||||||||||||||||||| |||||||||||| | || ||| ||||| |
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| T |
49743020 |
ccaaccattgtccgtatccttgaagttaagaaaccttccttgttcttggacttttctcttctcatgcttaggttctttttgttcttttgaattgattttc |
49742921 |
T |
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| Q |
344 |
atctt |
348 |
Q |
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||||| |
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| T |
49742920 |
atctt |
49742916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 49743250 - 49743134
Alignment:
| Q |
10 |
ttaatgtatgtcatttggatcacacacacgaagaagttcttatcagaataaaacttgttcttgactttatcatacaaaacttggcttcgctccttaagat |
109 |
Q |
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|||||||||||| ||||||||| ||||| |||||| | | |||||| | || ||||| ||||| || |||||||||| ||||| ||||||||||| |
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| T |
49743250 |
ttaatgtatgtcttttggatcatacacatgaagaaatccatatcagcgtggaaaaaattcttcactttgtcgtacaaaactttgcttctctccttaagat |
49743151 |
T |
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| Q |
110 |
catcaccactaattcct |
126 |
Q |
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|||||| |||| ||||| |
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| T |
49743150 |
catcacaactacttcct |
49743134 |
T |
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