View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12653_high_4 (Length: 306)

Name: NF12653_high_4
Description: NF12653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12653_high_4
NF12653_high_4
[»] chr1 (1 HSPs)
chr1 (9-305)||(5313636-5313932)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 5313636 - 5313932
Alignment:
Q  9 agcagagaaaaatttgcgagcgtgattttttcggtatgaattaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313636 agcagagaaaaatttgcgagcgtgattttttcggtatgaattaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaa 5313735  T
Q  109 gagaagagtgtaactgtagttcgtattagtgtgagagagtcacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaagatgtgaaggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5313736 gagaagagtgtaactgtagttcgtattagtgtgagagagtcacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaaaatgtgaaggt 5313835  T
Q  209 ggaaggtgaggtaccagaaagagtgatgtcaaaattgtacacacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttct 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313836 ggaaggtgaggtaccagaaagagtgatgtcaaaattgtacacacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttct 5313932  T

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