View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12653_low_1 (Length: 322)

Name: NF12653_low_1
Description: NF12653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12653_low_1
NF12653_low_1
[»] chr1 (1 HSPs)
chr1 (17-314)||(5313636-5313933)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 5313933 - 5313636
Alignment:
Q  17 aagaagaactgaagtcacggcgagtgcattaattctcatcaacaacgcgcgtacgtgtgtacaattttgacatcactctttctggtacctcaccttccac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313933 aagaagaactgaagtcacggcgagtgcattaattctcatcaacaacgcgcgtacgtgtgtacaattttgacatcactctttctggtacctcaccttccac 5313834  T
Q  117 cttcacattttcggtgttaatttttctcaaatccaaaaccacaatcacgctgcgtgtgactctctcacactaatacgaactacagttacactcttctctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313833 cttcacattttcggtgttaatttttctcaaatccaaaaccacaatcacgctgcgtgtgactctctcacactaatacgaactacagttacactcttctctt 5313734  T
Q  217 cacaccataacaacgtaacggtcaaattttcgctctcatttttcaacctcttcattaattcataccgaaaaaatcacgctcgcaaatttttctctgct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313733 cacaccataacaacgtaacggtcaaattttcgctctcatttttcaacctcttcattaattcataccgaaaaaatcacgctcgcaaatttttctctgct 5313636  T

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