View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12654_high_1 (Length: 338)

Name: NF12654_high_1
Description: NF12654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12654_high_1
NF12654_high_1
[»] chr4 (17 HSPs)
chr4 (18-332)||(5551831-5552145)
chr4 (18-313)||(5854265-5854563)
chr4 (25-323)||(5849282-5849583)
chr4 (25-315)||(5887507-5887797)
chr4 (52-325)||(5896382-5896658)
chr4 (31-316)||(3747594-3747879)
chr4 (27-323)||(5557605-5557901)
chr4 (203-316)||(5563397-5563510)
chr4 (204-313)||(5856751-5856860)
chr4 (229-323)||(5612206-5612300)
chr4 (236-323)||(5604088-5604175)
chr4 (25-162)||(5612364-5612501)
chr4 (28-106)||(5856955-5857033)
chr4 (274-328)||(5890816-5890870)
chr4 (237-323)||(5572654-5572740)
chr4 (237-323)||(5584861-5584947)
chr4 (58-106)||(5604302-5604350)
[»] chr8 (1 HSPs)
chr8 (276-323)||(1481830-1481877)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 5552145 - 5551831
Alignment:
Q  18 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5552145 catggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcagattgtggacatttcttgcaacaatttcaatggtaagttacaag 5552046  T
Q  118 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  5552045 aaaaatacttcgcaacttgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacgcgaaacaaagactgctcatactatcagga 5551946  T
Q  218 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccg 317  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5551945 tagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacca 5551846  T
Q  318 ataccacaggttctg 332  Q
    |||||||||||||||    
T  5551845 ataccacaggttctg 5551831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 5854265 - 5854563
Alignment:
Q  18 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 117  Q
    |||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||    
T  5854265 catggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggacattgctttcaacaatttcaatggaaaactacaag 5854364  T
Q  118 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 217  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||||||| | ||| ||||| | | |||| ||| ||||    
T  5854365 aaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatgttatatcagacttcatccacacgctaaagaaagactacacatattatcagga 5854462  T
Q  218 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagc-----aatcttcacagccattgatttctcatccaatcattttgaag 312  Q
    || |||||| ||||| | |||||||||| | ||||||||||||||||||||| |     |||||||||||| ||||||||||||||||||||||| ||||    
T  5854463 tactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatataatcttcacagcgattgatttctcatccaatcatttcgaag 5854562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 5849282 - 5849583
Alignment:
Q  25 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 124  Q
    ||||||||||||||||||||| |  | |||||| ||||||||||||||| |||||||||||| |||| | |||||||||||| ||  ||| |||||||||    
T  5849282 ccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaattgtggacattgctttgaacaatttcaatggaaaaataccagaaaaata 5849381  T
Q  125 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccaca-ca--cgaaacaaagattgctcatactattaggatagt 221  Q
     |||   |||||||| ||||||||||| ||||||  ||||  |||| ||||||||||| ||| ||   |||| ||   || |||||| ||  | ||||||    
T  5849382 tttcatgacatgggaaagaatgatgcatgatgaaaatgattctatatcagacttcatctacagcatgggaaagaacttttactcatattaccaagatagt 5849481  T
Q  222 gtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatac 321  Q
    ||||| ||||| | |||||||||  |||| |||| ||  |||||||||  |||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  5849482 gtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggaccaatac 5849581  T
Q  322 ca 323  Q
    ||    
T  5849582 ca 5849583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 5887507 - 5887797
Alignment:
Q  25 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 124  Q
    |||||||||||||| |||| | |  | |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||| |||||||||    
T  5887507 ccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaaataccagaaaaata 5887606  T
Q  125 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtg 224  Q
     ||| |||||||||| ||||||||||||||||||   ||| | | | ||||||||||||| |   ||   ||    | |||||| ||  | |||||||||    
T  5887607 tttcacaacatgggaaagaatgatgcaagatgaaaacgatttgaaatcagacttcatccatatgagatttaacttcttctcatattaccaagatagtgtg 5887706  T
Q  225 acggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 315  Q
    || ||||| | |||||||||  || | ||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5887707 acagtttccaataaaggtcaagaacttaagtatgataaaattctaacaatctttacagccattgatttctcatccaatcattttgaaggac 5887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 52 - 325
Target Start/End: Original strand, 5896382 - 5896658
Alignment:
Q  52 ataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgcaacatgggatagaatgatgca 151  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| || ||  |||||||||||||||| ||||||||||| | ||||| | |    
T  5896382 ataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaacggaaaactacaagaaaaatactttgcaacatgggaaaaaatgaagaa 5896481  T
Q  152 agatgaagttgatgttataccagacttcatccacacacg---aaacaaagattgctcatactattaggatagtgtgacggtttctattaaaggtcagcaa 248  Q
     ||||||    ||||| || ||||||| ||||||||  |   ||  | ||| | | |||| ||| |||||||||||||  |||||| |||||||||        
T  5896482 tgatgaaaacaatgttctatcagactttatccacacgggggaaaggacagactacacatattatcaggatagtgtgacaatttctactaaaggtcaagtg 5896581  T
Q  249 atgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgataccaca 325  Q
    ||| ||||| |||||||| || ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  5896582 atgcagttgcttaaaattttaacaatctttacagccattgatttctcatcaaatcatttcgaaggaccaataccaca 5896658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 316
Target Start/End: Complemental strand, 3747879 - 3747594
Alignment:
Q  31 aatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgc 130  Q
    ||||||||| ||||| | || |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||   |||||||| ||| |    
T  3747879 aatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaaatatttcac 3747780  T
Q  131 aacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgacggtt 230  Q
    | ||||||| ||||||||||| ||||||  ||||| | || | || || ||||  |||    |   |     | |||| ||| | |||||||||||||||    
T  3747779 agcatgggaaagaatgatgcatgatgaacatgatgatgtatcggaatttatcccgacagtggaggcattcaacccatattatcatgatagtgtgacggtt 3747680  T
Q  231 tctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacc 316  Q
    || | |||||||||  | ||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  3747679 tccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc 3747594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 323
Target Start/End: Complemental strand, 5557901 - 5557605
Alignment:
Q  27 atagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatact 126  Q
    |||||||||||||||||||    | |||||| ||||||||||||||| ||||| || ||| |||||| |||||||||||| ||| |||  |||||||| |    
T  5557901 atagaatgttcacattcactcgaaaataagccttggaaaatgattcaaattgttgatattgctttcaacaatttcaatgggaagctacctgaaaaatatt 5557802  T
Q  127 tcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgac 226  Q
    || || ||||||| ||||||| ||  || |||  ||||  | || |||||||  |||||||| |  |   |   |  ||||| ||  ||||||||| |||    
T  5557801 tcacatcatgggaaagaatgaagcgtgaagaaaatgataatgtatcagactttgtccacacaggggattcattattatcatattaccaggatagtgcgac 5557702  T
Q  227 ggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
     ||||| | ||||||||  |||||| ||||||||||||||||| |||| || ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  5557701 agtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaaccattgacttctcatccaatcattttgaaggaccaatacca 5557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 203 - 316
Target Start/End: Complemental strand, 5563510 - 5563397
Alignment:
Q  203 ctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaat 302  Q
    |||||| ||| |||||||| |||| ||||| ||||||||||| || ||  |||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  5563510 ctcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaatcttcacagccattgatttatcatccaat 5563411  T
Q  303 cattttgaaggacc 316  Q
    ||||||||||||||    
T  5563410 cattttgaaggacc 5563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 204 - 313
Target Start/End: Complemental strand, 5856860 - 5856751
Alignment:
Q  204 tcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatc 303  Q
    ||||| ||| |||||||||||||  |||| | ||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||| ||||||||||    
T  5856860 tcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacagccattgatttatcatccaatc 5856761  T
Q  304 attttgaagg 313  Q
    ||||||||||    
T  5856760 attttgaagg 5856751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 5612300 - 5612206
Alignment:
Q  229 tttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
    |||||| |||||||||  | |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||||| ||||||    
T  5612300 tttctactaaaggtcaagagatgaagttggttaaaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaatacca 5612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 5604175 - 5604088
Alignment:
Q  236 taaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
    ||||||||| |||||| ||||||||||||||||| |||| | ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  5604175 taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaatacca 5604088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 5612501 - 5612364
Alignment:
Q  25 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 124  Q
    ||||||||||| |||| |||| |  | |||||| ||||||||||||||| |||||||||||| | ||||   ||||||| || ||  ||| ||||| ||     
T  5612501 ccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaattgtggacattgcattcaatgatttcaacggaaaactaccagaaacatt 5612402  T
Q  125 cttcgcaacatgggatagaatgatgcaagatgaagttg 162  Q
    |||| |||||||||| | ||||||||| ||||||||||    
T  5612401 cttcacaacatgggaaaaaatgatgcacgatgaagttg 5612364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 5857033 - 5856955
Alignment:
Q  28 tagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 106  Q
    |||||||||||||||||| |  | ||||||  |||||||||||||| ||||| |||||| |||||| ||||||||||||    
T  5857033 tagaatgttcacattcactagaaaataagccgtggaaaatgattcaaattgtcgacattgctttcaacaatttcaatgg 5856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 5890816 - 5890870
Alignment:
Q  274 tcttcacagccattgatttctcatccaatcattttgaaggaccgataccacaggt 328  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  5890816 tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggt 5890870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 5572654 - 5572740
Alignment:
Q  237 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5572654 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 5584861 - 5584947
Alignment:
Q  237 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5584861 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5584947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 5604350 - 5604302
Alignment:
Q  58 attggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 106  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||||    
T  5604350 attggaaaatgattcaaattgtggacattgcttccaacaatttcaatgg 5604302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 1481877 - 1481830
Alignment:
Q  276 ttcacagccattgatttctcatccaatcattttgaaggaccgatacca 323  Q
    |||||| |||||||||||||||||||||| |||||||||  |||||||    
T  1481877 ttcacaaccattgatttctcatccaatcactttgaaggattgatacca 1481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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