View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12654_high_1_N (Length: 362)
Name: NF12654_high_1_N
Description: NF12654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12654_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 350
Target Start/End: Original strand, 56277292 - 56277641
Alignment:
| Q |
4 |
atctctcatattctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggtggaacaacatcatttcaagccgttcattcatca |
103 |
Q |
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| T |
56277292 |
atctctcatattctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggttggaaccacatcatttcaagccgttcattcatca |
56277391 |
T |
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| Q |
104 |
aagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacattcc |
203 |
Q |
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| T |
56277392 |
aagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacattcc |
56277491 |
T |
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| Q |
204 |
tgtccaacccaaa---aacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtgcttttgtcatcttgtaaaggaatt |
300 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||| |
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| T |
56277492 |
tgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgttgttttggcttcctgtaaaggaatt |
56277591 |
T |
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| Q |
301 |
ctttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
350 |
Q |
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| T |
56277592 |
gtttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
56277641 |
T |
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