View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12655_high_3 (Length: 281)
Name: NF12655_high_3
Description: NF12655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12655_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 19981154 - 19981431
Alignment:
| Q |
1 |
aaactcacaccagtttgtttgaaacaaccccatttgtgtacttcttctatcaagcttttggagaatgtttcaatggctttctttgcagccatggttaaca |
100 |
Q |
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| T |
19981154 |
aaactcacaccagtttgtttgaaacaaccccatttgtgtacttcttctatcaagcttttggagaatgtttcaatagctttctttgcagccatggttaaca |
19981253 |
T |
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| Q |
101 |
aaaaac-nnnnnnncttgttctaaccaaagaatttgaattgaacaagcaattataacagaaaaacagaatctgaaactaacaagtaa------caataac |
193 |
Q |
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| T |
19981254 |
aaaaacttttttttcttgttctaaccaaagaatttgaattgaacaaacaattgtaacagaaaaacagaatctgaaactaacaagtaacaatagcaataac |
19981353 |
T |
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| Q |
194 |
aataagaagcatgttgaagaaagagagagaaattgtactatactttgaataagaataataatgaattgtgacagtgaa |
271 |
Q |
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| T |
19981354 |
aataacaagcatgttgaagaaagagagagaaattgtactatactttgaataagaataataatgaattgtgatagtgaa |
19981431 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8046332 - 8046377
Alignment:
| Q |
1 |
aaactcacaccagtttgtttgaaacaaccccatttgtgtacttctt |
46 |
Q |
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| T |
8046332 |
aaactcacaccagtttgcttcaaacaaccccatttatgcacttctt |
8046377 |
T |
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