View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12655_low_1 (Length: 445)
Name: NF12655_low_1
Description: NF12655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12655_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 21102493 - 21102077
Alignment:
| Q |
16 |
caaaaacctagaccgcagtcgttgctgtccggttcttgccgcatggcttttcgccgcccacgctcgttcggctctcgaaataacacccgatggagccgga |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
21102493 |
caaaaacctagaccgcagtcgttgctgtccagttcttgccgcatggcttttcgccgcccacgctcgttcggctcttgaaataacacccgacggagccgga |
21102394 |
T |
|
| Q |
116 |
gcaaacgcttcggctccatcaactggagaacagcaacaacttcctatgatgcctgatgactcgcagaaatgcgtaaattccttacaagactcacttatga |
215 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21102393 |
gcaaatgcttcggctccatcaacaggagaacaacaacaacttcctatgatgcctgatgactcacagaaatgcgtaaattccttacaagactcacttatga |
21102294 |
T |
|
| Q |
216 |
gtcgaaatattcgaatccctcaacctaatgcaacgtgtgatgcgattctatgtttttgtggtattaggttacatcaaattagttcgttgtcttgttctgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21102293 |
gtcgaaatattcgaatccctcaacctaatgcaacgtgtgatgcgattctatgtttttgtggtattaggttacatcaaattagctcgttgtcttgttctgc |
21102194 |
T |
|
| Q |
316 |
tgcgtttaatgtttcgggttcgcataaaaatgttgctactccaacttctgctgttcgtaacttggaaaataattgtcgtaatgcttcttatcagggttgc |
415 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21102193 |
tgcgtttaatgtttcgggttcgcataaaaatattgcaactccaactgttgctgttcgtaacttggaaaataattgtcgaaatgcttcttatcagggttgc |
21102094 |
T |
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| Q |
416 |
actaaatgtctctctgc |
432 |
Q |
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||||||||||||||||| |
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| T |
21102093 |
actaaatgtctctctgc |
21102077 |
T |
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