View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12655_low_5 (Length: 206)
Name: NF12655_low_5
Description: NF12655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12655_low_5 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 39676155 - 39675977
Alignment:
| Q |
28 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggattt |
127 |
Q |
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| T |
39676155 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggattt |
39676056 |
T |
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| Q |
128 |
cctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaag |
206 |
Q |
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| T |
39676055 |
cctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaag |
39675977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 10866591 - 10866502
Alignment:
| Q |
28 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
117 |
Q |
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| T |
10866591 |
ccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10866502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 10873714 - 10873803
Alignment:
| Q |
28 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
117 |
Q |
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| T |
10873714 |
ccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10873803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 10878785 - 10878874
Alignment:
| Q |
28 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
117 |
Q |
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| T |
10878785 |
ccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10878874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 10883856 - 10883945
Alignment:
| Q |
28 |
ccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
117 |
Q |
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| T |
10883856 |
ccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg |
10883945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 10887777 - 10887863
Alignment:
| Q |
31 |
agcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg |
117 |
Q |
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| T |
10887777 |
agcttcgactcaagggagtaagaaggaattgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactttttgg |
10887863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39676159 - 39676192
Alignment:
| Q |
1 |
ttgccgacgtgctgctgtgattaggaaccaagct |
34 |
Q |
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| T |
39676159 |
ttgccgacgtgctgctgtgattaggaaccaagct |
39676192 |
T |
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