View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12656_high_1 (Length: 872)
Name: NF12656_high_1
Description: NF12656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12656_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 494 - 864
Target Start/End: Original strand, 32830387 - 32830756
Alignment:
| Q |
494 |
catgcctccaaaagtgatttcctctgtgctcctcaagaaaagacatagacactacaccactaatcaaacggttcacagaaattgccaaacttgtcccttg |
593 |
Q |
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| T |
32830387 |
catgcctccaaaagtgatttcctctgagatact-aagaaaagacatagacactacaccactaatcaaacggttaacagaaattgccaaacttgtcccttg |
32830485 |
T |
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| Q |
594 |
tgcccttaacctcataggaaaaatttctgatgaatagacccatgttgtaggcccaagcccaatagnnnnnnntgaaacagcagcacaaacagcaaccaca |
693 |
Q |
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| T |
32830486 |
tgcccttaacctcataggaaaaatttctgatgaatagacccatgttgtaggcccaagcccaatagaaaaaaatgaaacagcagcacaaacagcaaccaca |
32830585 |
T |
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| Q |
694 |
cacaaagcaatagcccacatgggcttttcatctgaattgtgaagtaaagtacatcccattccaagcccaaataaggacactgccatacctgatgagccca |
793 |
Q |
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| T |
32830586 |
cacaaagcaatagcccacatgggcttttcatctgaattgtgaagtaaagtacatcccattccaagcccaaataaggacactgccatacctgatgagccca |
32830685 |
T |
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| Q |
794 |
acaacagcatgggccttcttccaaatttgtctaataccaatgctgaaaatagaacaaaacatgtctctgct |
864 |
Q |
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| T |
32830686 |
acaacaacatgggccttcttccaaatctgtctaataccaatgctgaaaatagaacaaaacatgtctttgct |
32830756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 196 - 436
Target Start/End: Original strand, 32830089 - 32830329
Alignment:
| Q |
196 |
aataaaactaattctaccattcttaagcttactatgaaattcaagaatcggtattccctcggtagccaaaatttcacattcacatagtcaccgaaaaagt |
295 |
Q |
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| T |
32830089 |
aataaaactaattctaccattcttaagcttactatgaaattcaagaatcggtattccctcggtagccaaaatttcacattcacatagtcaccgaaaaagt |
32830188 |
T |
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| Q |
296 |
gactgttgaatcgagatcagacgatgcagatttcaaaatcagaatcttggcaattctagggaatttggtttcgagatttcaacttaactcctcttcaaac |
395 |
Q |
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| T |
32830189 |
gactgttgaatcgagatcagacgatgcagatttcaaaataagaatgttggcaattctagggaattttgtttcgagatttcaacttaactcctcttcaaac |
32830288 |
T |
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| Q |
396 |
aaagcttcaatctcctctaagcttttacctttagtttctgg |
436 |
Q |
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| T |
32830289 |
aaagcttcaatctcctctaagcttttacctttagtttctgg |
32830329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 32829948 - 32830098
Alignment:
| Q |
29 |
gaaatatggaagcaccaaattccaagcaatccatgtggtccaatgtatcaaaccaatccaatttcttgccttagcagccaaaacaatgtatcaaacttnn |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32829948 |
gaaatatggaagcaccaaattccaagcaatccatgtggtccaatgtatcaaaccaatccaatttcttgccttagcagccaaaacaatgtatcaaacttaa |
32830047 |
T |
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| Q |
129 |
nnnnnnnnnnnttgcatttacatgtctattcctttcacagcaataaaacta |
179 |
Q |
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| T |
32830048 |
aaaatcaaaaattgcatttacatgtctattcctttcacagcaataaaacta |
32830098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 658
Target Start/End: Complemental strand, 43547537 - 43547416
Alignment:
| Q |
537 |
catagacactacaccactaatcaaacggttcacagaaattgccaaacttgtcccttgtgcccttaacctcataggaaaaatttctgatgaatagacccat |
636 |
Q |
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||||||||| || ||||| | ||| || ||||| |||||||| | ||| | ||||| || || | ||||||||||||||| || || ||||| ||||| |
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| T |
43547537 |
catagacaccactccacttaccaaccgattcactgaaattgcaatactcgaaccttgagctctaagcctcataggaaaaatctccgaagaataaacccaa |
43547438 |
T |
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| Q |
637 |
gttgtaggcccaagcccaatag |
658 |
Q |
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|| |||||||||||||||||| |
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| T |
43547437 |
gtaataggcccaagcccaatag |
43547416 |
T |
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