View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12656_high_2 (Length: 547)
Name: NF12656_high_2
Description: NF12656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12656_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 176 - 547
Target Start/End: Original strand, 44552088 - 44552459
Alignment:
| Q |
176 |
gtgattcatgagaattgtttcttttatgtgataagagctgtagattgcaattgtgacgtaagtttttcataaaatcatatcgtcagtcacttgatccaaa |
275 |
Q |
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| T |
44552088 |
gtgattcatgagaattgtttcttttatgtgataagagctgtagattgcaattgtgacgtaagtttttcataaaatcatatcgtcagtcacttgatccaaa |
44552187 |
T |
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| Q |
276 |
atttcaaacataaccaaaatactttaccttgggattattatttaattaagtttggtttaattagttttacttcgtttactgaaatgaaacctactacatt |
375 |
Q |
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| T |
44552188 |
atttcaaacataaccaaaatactttaccttgggattattatttaattaagtttggtttaattagttttacttcgtttactgaaatgaaacctactacgtt |
44552287 |
T |
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| Q |
376 |
ttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgataattagataatgtgacataactcgtaattctattgacca |
475 |
Q |
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| T |
44552288 |
ttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgatatttagataatgtgacataactcgtaattctattgacca |
44552387 |
T |
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| Q |
476 |
tgaacgtgacctacaaaaaccagttgtgtctttcgttatttggctagactcgcggataatatgtgtagttat |
547 |
Q |
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| T |
44552388 |
tgaacgtgacctacaaaaactagttgtgtctttcgttatttggttagactcgcggataatgtgtgtagttat |
44552459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 44551925 - 44552059
Alignment:
| Q |
10 |
attattctatagaaagtgaagtgtgacaaacagtgtgctttaaatgacacgagcaatgcccaaaatcaccatcatgaatcatcatatcatatagataaga |
109 |
Q |
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| T |
44551925 |
attattatatagaaagtgaagtgtgacaaacagtgtgctttaaatgacacgagcaatgcccaaaatcaccatcatgaatcatcatatcatatagataaga |
44552024 |
T |
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| Q |
110 |
aaggtccatcgtgttctataaaagaaatatattat |
144 |
Q |
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| T |
44552025 |
aaggtccatcgtgttctataaaagaaatatattat |
44552059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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