View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12656_low_1 (Length: 436)
Name: NF12656_low_1
Description: NF12656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12656_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 76 - 436
Target Start/End: Original strand, 4061522 - 4061882
Alignment:
| Q |
76 |
aattatgtatatactccaatgaaagaagtgtgatgggaagggtgttatcgtccgatcaataaaactgccaccattgctgaaatttatgacacgacctatg |
175 |
Q |
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| T |
4061522 |
aattatgtatatactccaatgaaagaagtgtgatgggaagggtgttatcgtccgatcaataaaactgccaccattgctgaaatttatgacacgacctatg |
4061621 |
T |
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| Q |
176 |
tggtgatgttaggtgagtcactttttaaaaggcaacagtgatagtgagttcctatccgtccgatactagtggagaggattaatccaacggtccaaaggcc |
275 |
Q |
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| T |
4061622 |
tggtgatgttaggtgagtcactttttaaaaggcaacagtgatagtgagttcctatccgtccgatactagtggagaggattgatccaacggtccaaaggcc |
4061721 |
T |
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| Q |
276 |
cttaatgcttctgaaggttttaccgtcatagactaattgccaaatttggatcataaagctaccaacacagtaacatgaatgacatttatgacttcgcaat |
375 |
Q |
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| T |
4061722 |
cttaatgcttctgaaggttttaccgtcatagactaattgccaaatttggatcataaagctaccaacacagtaacatgaatgacatttatgactttgcaat |
4061821 |
T |
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| Q |
376 |
ttaggtaatggaaatgaaatctaacgataggatatggtttttgcatctctgcttctccact |
436 |
Q |
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| T |
4061822 |
ttaggtaatggaaatgaaatctaacgataggatatggtttttgcatctttggttttccact |
4061882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4061474 - 4061537
Alignment:
| Q |
1 |
tcagatatgaccttcggtacgatgggatgatattcagatagagtgtataattatctatatactc |
64 |
Q |
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| T |
4061474 |
tcagatacgaccttcagtacgatgagatgatattcagatagagtgtataattatgtatatactc |
4061537 |
T |
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