View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12656_low_3 (Length: 269)

Name: NF12656_low_3
Description: NF12656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12656_low_3
NF12656_low_3
[»] chr4 (6 HSPs)
chr4 (1-259)||(6020418-6020676)
chr4 (48-170)||(48804142-48804262)
chr4 (7-210)||(26070742-26070944)
chr4 (6-201)||(51702150-51702342)
chr4 (27-101)||(42912510-42912584)
chr4 (145-223)||(42912426-42912504)
[»] chr1 (2 HSPs)
chr1 (3-205)||(24886629-24886827)
chr1 (44-112)||(27292234-27292303)
[»] chr2 (2 HSPs)
chr2 (6-205)||(20262630-20262825)
chr2 (114-204)||(28772046-28772136)
[»] chr7 (1 HSPs)
chr7 (6-176)||(26285938-26286104)
[»] chr3 (2 HSPs)
chr3 (49-207)||(51925801-51925956)
chr3 (114-215)||(28690213-28690314)
[»] chr5 (2 HSPs)
chr5 (6-204)||(12658521-12658715)
chr5 (47-110)||(25640394-25640458)
[»] chr8 (1 HSPs)
chr8 (18-211)||(26130118-26130311)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 6020676 - 6020418
Alignment:
Q  1 atggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6020676 atggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactatggatagtccagcaaacccacgtgtggatgcgaaaccg 6020577  T
Q  101 acttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6020576 acttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttccaaggtccaaaagctccct 6020477  T
Q  201 aaaaaacatcaacaaaccataaacaccctttcggatcaaaccaatcagagtgatgtcca 259  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  6020476 aaaaaacatcaacaaaccataaacgccctttcggaccaaaccaatcagagtgaagtcca 6020418  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 48804262 - 48804142
Alignment:
Q  48 taaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagta 147  Q
    ||||||||||||||||||| || ||||| ||||||||||||||| |||||||||  ||||||||  |||||||||||||| || |||||||||| | |||    
T  48804262 taaacaacactactacggacagcccagcgaacccacgtgtggatacgaaaccgaactgcaaaaa--aaaatgcagagtgagtggttagagtatcaaggta 48804165  T
Q  148 ggtgtatgaatcgtctaccaaca 170  Q
    || ||||||||||||| ||||||    
T  48804164 ggcgtatgaatcgtctgccaaca 48804142  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 26070944 - 26070742
Alignment:
Q  7 gatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgc 106  Q
    ||||||| ||||||||||| ||||||| |||| || |||||||||||||||||||||||||||  |||| ||||||| ||||||| |||| ||||  |||    
T  26070944 gatacaacaaatcagtacacaagtggtaaagaaaacaactctaaacaacactactacggatagcgcagcgaacccacatgtggatacgaagccgaaatgc 26070845  T
Q  107 aaaaaataaaatgcagagtgaatgtttagagtat--ccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 204  Q
    ||||   || | |||||||||||||| | |||||    | |||||  | |||||||||  |||||| |||||||  | ||||||||| | ||||||||||    
T  26070844 aaaa---aagacgcagagtgaatgttcaaagtattataaggtaggcatttgaatcgtccgccaacacagaaacgacccaaggtccaacaactccctaaaa 26070748  T
Q  205 aacatc 210  Q
    ||||||    
T  26070747 aacatc 26070742  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 51702342 - 51702150
Alignment:
Q  6 tgatacaataaatcagtacataagtggttaa--gacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgact 103  Q
    |||||||  ||||||||||| ||||||| ||  || || |||||||||||||||| | ||||  | |||||| ||||||||| ||||| ||||||||| |    
T  51702342 tgatacatcaaatcagtacacaagtggtgaatagaaaacaactctaaacaacacttccacgggcaatccagcgaacccacgtatggattcgaaaccgaat 51702243  T
Q  104 tgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctcccta 201  Q
    | ||||||| || ||  ||||||||||||  |||||| |||||  | ||||||||||||| |||| | ||||||| || ||||||||  |||||||||    
T  51702242 tacaaaaaaaaacat--agagtgaatgttccgagtat-caagt--gcgtatgaatcgtctgccaaaacagaaacgatccaaggtccagcagctcccta 51702150  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 42912584 - 42912510
Alignment:
Q  27 aagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccga 101  Q
    ||||||| |||| || |||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||||    
T  42912584 aagtggtaaagaaaacaactctaaacaacactaccacggacaatccagcgaatccacgtgtggatgcgaaaccga 42912510  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 42912504 - 42912426
Alignment:
Q  145 gtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 223  Q
    ||||||||||||||||||| | |||| |||| || || ||||||||| |||||||| |||||||||| ||| |||||||    
T  42912504 gtaggtgtatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaa 42912426  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 24886827 - 24886629
Alignment:
Q  3 ggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgac 102  Q
    ||||||||||| ||||||| ||| ||| ||| |||| || ||||||||||||||||||||| || || ||||| ||||||||| ||||| |||||||||     
T  24886827 ggatgatacaacaaatcagaacacaagcggtaaagaaaacaactctaaacaacactactacagacagcccagcgaacccacgtatggatacgaaaccgaa 24886728  T
Q  103 ttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaa 202  Q
     ||||||    |||| ||| |||||| |||||||||||  | |||||  ||||||||||||||||||| ||||||| |  ||||||||| |||||| |||    
T  24886727 ctgcaaa----aaaacgcatagtgaaagtttagagtattaaggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaacagctccataa 24886632  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 27292234 - 27292303
Alignment:
Q  44 actctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaa 112  Q
    ||||||||||| |||||| ||||| |  |||||||||||||||||||   ||||||||| ||||||||||    
T  27292234 actctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaaa 27292303  T

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Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 20262630 - 20262825
Alignment:
Q  6 tgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttg 105  Q
    |||||||| ||||||| | | ||||||| |||| || |||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||  ||  ||    
T  20262630 tgatacaacaaatcagaatacaagtggtaaagaaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggatacgaaattgaactg 20262729  T
Q  106 caaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaa 205  Q
    ||||    ||||||||||||||| |||||||||||  | ||||| ||||||||||||| |||||| ||||||| |  ||||||||| |||||||||||||    
T  20262730 caaa----aaaatgcagagtgaaagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaacagctccctaaaaa 20262825  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 28772046 - 28772136
Alignment:
Q  114 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 204  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||| | ||| || |||||   || ||||||||| ||||||||||||    
T  28772046 aaaatgcagcgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatccaaggtccaacagctccctaaaa 28772136  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 26285938 - 26286104
Alignment:
Q  6 tgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttg 105  Q
    |||||||| |||||| |||| |||||||||||| || |||||||||||| |||||||| || ||  |||  ||||| ||||||||| | ||||| |  ||    
T  26285938 tgatacaacaaatcattacacaagtggttaagaaaacaactctaaacaagactactacagacagatcagtgaaccctcgtgtggatacaaaaccaaactg 26286037  T
Q  106 caaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaa 176  Q
    |||||||    | |||||||||| |||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  26286038 caaaaaa----acgcagagtgaaagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 51925801 - 51925956
Alignment:
Q  49 aaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtag 148  Q
    ||||||||||||||| |  || ||| | ||||||| ||||||| ||||||| |  || ||||   |||||||||  ||||||||||||||||| | ||||    
T  51925801 aaacaacactactacagccagcccaacgaacccacatgtggatacgaaaccaaactggaaaa---aaaatgcagcatgaatgtttagagtatcaaggtag 51925897  T
Q  149 gtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaac 207  Q
    | ||||||||||||| |||||| | |||||  | ||||||||| |||||||||||||||    
T  51925898 gcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctccctaaaaaac 51925956  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 28690314 - 28690213
Alignment:
Q  114 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaac 213  Q
    |||| |||| ||||||||||| |||||| | ||| | |||||||||| || |||||| | ||||| || ||||||||| | || |||||||||  |||||    
T  28690314 aaaacgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaac 28690215  T
Q  214 aa 215  Q
    ||    
T  28690214 aa 28690213  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 12658715 - 12658521
Alignment:
Q  6 tgatacaataaatcagtacataagtggt-taagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgactt 104  Q
    |||||||| |||||| |||| ||||||| ||| | || |||||||||| | ||||| ||||| | ||||||| | |||||| ||||||||||||||| ||    
T  12658715 tgatacaaaaaatcaatacacaagtggtataaaaaaacaactctaaaccaaactaccacggacaatccagcacaaccacgtatggatgcgaaaccgaatt 12658616  T
Q  105 gcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaa 204  Q
    |||||     ||||||||||||  |||| | |||||  ||||||  ||||| ||| ||| |||||| | ||||| || ||||||||  ||||||||||||    
T  12658615 gcaaa-----aaatgcagagtggttgttcatagtattaaagtagacgtatggatcatctgccaacacataaacgatccaaggtccagcagctccctaaaa 12658521  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 25640394 - 25640458
Alignment:
Q  47 ctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaa 110  Q
    |||||||| |||||| ||||| | |||||| |||||||||||||  |||||||||| ||||||||    
T  25640394 ctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaaaa 25640458  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 26130311 - 26130118
Alignment:
Q  18 tcagtacataagtggttaa-gacaataactctaaacaacactactacgg---atagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaat 113  Q
    |||||||| ||||||| || || || |||||||||||||| |||||| |   | || ||||| ||||||||||||||| ||||||| |  |||||||||     
T  26130311 tcagtacaaaagtggtaaatgaaaacaactctaaacaacagtactactgcagacagcccagcgaacccacgtgtggatacgaaaccaaactgcaaaaaaa 26130212  T
Q  114 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatca 211  Q
     |    | |||||  ||||||||||||| | ||||| ||||||||||||| |||| | ||||||| |  ||| ||||| |||||||||||||||||||    
T  26130211 ca----ctgagtgggtgtttagagtatctaggtaggcgtatgaatcgtctgccaaaacagaaacgattcaagatccaacagctccctaaaaaacatca 26130118  T

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