View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12657_high_1 (Length: 613)
Name: NF12657_high_1
Description: NF12657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12657_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 53005828 - 53006428
Alignment:
| Q |
18 |
gtagttacagtgcacataatatttgctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactgatc-- |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53005828 |
gtagttacagtgcacatagtatttgctgctaaactttgtcacttaatgctgaacaggacgctatttgacatcttagtatagtcaattgcttactgatctc |
53005927 |
T |
|
| Q |
116 |
------------attccgagcaaccttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttcatatctgttacgtatagctaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
53005928 |
tgttatgttatcattccgagcaaccttctatgaacaccgtaccttattataatctcatttcttatcaatcataacttcctatctgttacatatagctaat |
53006027 |
T |
|
| Q |
204 |
attctaatttttct-agaagcaagaactgatgcaatttttcacagccagataaactaataaatgagtagatttgtcatttgatgtctaccttacaattcg |
302 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006028 |
attctaattttttttagaagcaagaactgatgcaatttttcacagccagataaactaataaatgagtagatttgtcatttgatgtctaccttacaattcg |
53006127 |
T |
|
| Q |
303 |
gatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtgcatctaatatcttaaattgcggtgactgttaaaccaagattgcattt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006128 |
gatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtgcatctaatatcttaaattgcggtgactgttaaaccaagattgcattt |
53006227 |
T |
|
| Q |
403 |
acaaggcacacaatgcattcaaataaactttgcttatttctcctggaaaggaaatttttcgacatcttactgtagtcatttcataactgatctctagtta |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53006228 |
acaaggcacacaatgcattcaaataaactttgcctatttctcctggaaaggaaatttttcgacatcttattgtagtcatttcataactgatctctagtta |
53006327 |
T |
|
| Q |
503 |
gttattattcaaatcataattctatgtttccctatgtagcggcaactatccaaaatgattcagatattcgtttcgaacacctattcgaaaactaatctgt |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
53006328 |
gttattattcaaatcataattctatgtttccctatgtagcggcgactatccaaaatgattcagatattcgttttgaacacctatttgaaaactaatctgt |
53006427 |
T |
|
| Q |
603 |
g |
603 |
Q |
| |
|
| |
|
|
| T |
53006428 |
g |
53006428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University